Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABU16_RS04755 Genome accession   NZ_CP011882
Coordinates   935862..936380 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain TO-A JPC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 930862..941380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS04725 (ABU16_0972) yyaJ 931365..932720 (+) 1356 WP_003243011.1 MFS transporter -
  ABU16_RS04730 (ABU16_0973) maa 932754..933308 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  ABU16_RS04735 (ABU16_0974) yyaH 933326..933706 (-) 381 WP_003244460.1 VOC family protein -
  ABU16_RS04740 (ABU16_0975) ccpB 933762..934697 (-) 936 WP_048217616.1 transcriptional regulator CcpB -
  ABU16_RS04745 (ABU16_0976) xth 934756..935514 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  ABU16_RS04750 rpsR 935579..935818 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ABU16_RS04755 (ABU16_0977) ssbA 935862..936380 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABU16_RS04760 (ABU16_0978) rpsF 936421..936708 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ABU16_RS04765 (ABU16_0979) ychF 936819..937919 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ABU16_RS04770 (ABU16_0980) yyaE 938046..940049 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  ABU16_RS04775 (ABU16_0981) yyzM 940100..940306 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=149152 ABU16_RS04755 WP_003219228.1 935862..936380(-) (ssbA) [Bacillus subtilis strain TO-A JPC]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=149152 ABU16_RS04755 WP_003219228.1 935862..936380(-) (ssbA) [Bacillus subtilis strain TO-A JPC]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment