Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB984_RS08120 Genome accession   NZ_CP011860
Coordinates   1659230..1659703 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain G4T10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1650696..1659703 1659230..1659703 within 0


Gene organization within MGE regions


Location: 1650696..1659703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB984_RS08080 (AB984_01663) - 1650696..1651424 (-) 729 WP_013853428.1 MBL fold metallo-hydrolase -
  AB984_RS08085 (AB984_01664) - 1651441..1652976 (-) 1536 WP_003774364.1 M23 family metallopeptidase -
  AB984_RS08090 (AB984_01665) - 1653044..1654552 (-) 1509 WP_003774363.1 M23 family metallopeptidase -
  AB984_RS08095 (AB984_01666) dnaB 1654554..1655924 (-) 1371 WP_003774361.1 replicative DNA helicase -
  AB984_RS08100 (AB984_01667) rplI 1655936..1656382 (-) 447 WP_013853429.1 50S ribosomal protein L9 -
  AB984_RS08105 (AB984_01668) - 1656384..1658339 (-) 1956 WP_003774359.1 DHH family phosphoesterase -
  AB984_RS08110 (AB984_01669) - 1658386..1658925 (-) 540 WP_013853430.1 DUF2232 domain-containing protein -
  AB984_RS08115 (AB984_01670) rpsR 1658979..1659212 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  AB984_RS08120 (AB984_01671) ssb 1659230..1659703 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=149106 AB984_RS08120 WP_003774356.1 1659230..1659703(-) (ssb) [Erysipelothrix rhusiopathiae strain G4T10]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=149106 AB984_RS08120 WP_003774356.1 1659230..1659703(-) (ssb) [Erysipelothrix rhusiopathiae strain G4T10]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment