Detailed information NTG0149010

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: AB691_RS03715
• Genome accession: NZ_CP011854
• Coordinates: 795199..795690 (+)
• Length: 163 a.a.
• NCBI ID: WP_003281797.1
• Uniprot ID: A0A210XTT8
• Organism: Stutzerimonas stutzeri strain SLG510A3-8
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	795199..808125	795199..795690	within	0

Gene organization within MGE regions

Location: 795199..808125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB691_RS03715 (AB691_0766)	ssb	795199..795690 (+)	492	WP_003281797.1	single-stranded DNA-binding protein	Machinery gene
AB691_RS21525 (AB691_0767)	-	795833..797047 (+)	1215	WP_080965122.1	tyrosine-type recombinase/integrase	-
AB691_RS03720 (AB691_0768)	-	797097..798590 (+)	1494	WP_407043345.1	site-specific integrase	-
AB691_RS03725 (AB691_0769)	-	798583..800577 (+)	1995	WP_048328538.1	integrase	-
AB691_RS03730	-	800580..800993 (+)	414	WP_048330393.1	hypothetical protein	-
AB691_RS03735	-	801106..801324 (+)	219	WP_048328539.1	BPSL0761 family protein	-
AB691_RS03740	-	801321..801548 (-)	228	WP_014821616.1	helix-turn-helix domain-containing protein	-
AB691_RS03745	-	801653..802243 (+)	591	WP_048328540.1	hypothetical protein	-
AB691_RS03750 (AB691_0772)	-	802240..803631 (+)	1392	WP_048328541.1	DEAD/DEAH box helicase	-
AB691_RS03755 (AB691_0773)	-	803741..804478 (-)	738	WP_014821613.1	metallophosphoesterase	-
AB691_RS03760	-	804667..805026 (-)	360	WP_014821612.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
AB691_RS03765	-	805238..805552 (+)	315	WP_014821611.1	hypothetical protein	-
AB691_RS03770 (AB691_0774)	-	805631..806344 (-)	714	WP_014821610.1	SOS response-associated peptidase family protein	-
AB691_RS03775 (AB691_0775)	-	806427..806858 (+)	432	WP_011914412.1	LexA family protein	-
AB691_RS03780 (AB691_0776)	umuC	806845..808125 (+)	1281	WP_014821609.1	translesion error-prone DNA polymerase V subunit UmuC	-

Sequence

Protein

• Length: 163 a.a.
• Molecular weight: 18314.38 Da
• Isoelectric Point: 5.9492

>NTDB_id=149010 AB691_RS03715 WP_003281797.1 795199..795690(+) (ssb) [Stutzerimonas stutzeri strain SLG510A3-8]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide

• Length: 492 bp

>NTDB_id=149010 AB691_RS03715 WP_003281797.1 795199..795690(+) (ssb) [Stutzerimonas stutzeri strain SLG510A3-8]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-108)

3D structure

• AlphaFold DB: A0A210XTT8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	56.571	100	0.607
ssb	Neisseria gonorrhoeae MS11	47.727	100	0.515
ssb	Glaesserella parasuis strain SC1401	45.355	100	0.509
ssb	Neisseria meningitidis MC58	46.591	100	0.503