Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L103DPR2_RS00745 Genome accession   NZ_CP011834
Coordinates   177816..178307 (-) Length   163 a.a.
NCBI ID   WP_055359306.1    Uniprot ID   A0A0P0LWH6
Organism   Limnohabitans sp. 103DPR2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 172816..183307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L103DPR2_RS00730 (L103DPR2_00144) - 173145..173372 (-) 228 WP_055359303.1 DUF2892 domain-containing protein -
  L103DPR2_RS00735 (L103DPR2_00145) - 173369..176644 (-) 3276 WP_055359304.1 efflux RND transporter permease subunit -
  L103DPR2_RS00740 (L103DPR2_00146) - 176631..177701 (-) 1071 WP_055359305.1 efflux RND transporter periplasmic adaptor subunit -
  L103DPR2_RS00745 (L103DPR2_00147) ssb 177816..178307 (-) 492 WP_055359306.1 single-stranded DNA-binding protein Machinery gene
  L103DPR2_RS00750 (L103DPR2_00148) - 178356..179531 (-) 1176 WP_055361755.1 MFS transporter -
  L103DPR2_RS00755 (L103DPR2_00149) - 179797..180066 (+) 270 WP_082466838.1 high-potential iron-sulfur protein -
  L103DPR2_RS00760 (L103DPR2_00150) uvrA 180236..183277 (+) 3042 WP_231717657.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17441.48 Da        Isoelectric Point: 5.9575

>NTDB_id=148892 L103DPR2_RS00745 WP_055359306.1 177816..178307(-) (ssb) [Limnohabitans sp. 103DPR2]
MASVNKVILIGNCGRDPEIRYLPSGQAVANISIATTSRRKDRTSGETVEDTQWHRVTFYDRLAEIAGEYVKKGRPIYVEG
RLKYGKYTDQAGVEKNTVDIIATEMQLLGGREGMGGPSGGDEDGGAPARRPSAAPRPAASAPASRPAAKPASGFDDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=148892 L103DPR2_RS00745 WP_055359306.1 177816..178307(-) (ssb) [Limnohabitans sp. 103DPR2]
ATGGCATCCGTCAACAAAGTCATTCTGATCGGCAACTGTGGCCGTGACCCCGAAATTCGCTACTTGCCTTCTGGCCAGGC
CGTGGCCAACATCAGCATTGCCACCACCAGCCGCCGCAAAGACCGCACCTCTGGCGAAACGGTTGAAGACACCCAATGGC
ACCGCGTCACTTTTTACGACCGCCTGGCCGAGATTGCTGGCGAGTACGTCAAAAAAGGCCGCCCCATTTATGTCGAAGGT
CGTTTGAAGTACGGCAAGTACACCGACCAAGCCGGCGTTGAGAAAAACACCGTCGACATCATCGCCACCGAAATGCAATT
GCTCGGCGGCCGTGAAGGCATGGGCGGCCCCAGCGGTGGCGACGAAGACGGTGGCGCGCCTGCTCGCCGTCCTTCAGCCG
CACCCCGTCCAGCGGCCAGTGCGCCTGCTAGCCGACCCGCCGCCAAGCCTGCCAGTGGTTTTGATGACATGGACGACGAC
ATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0LWH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.503
  ssb Vibrio cholerae strain A1552

45.506

100

0.497
  ssb Neisseria meningitidis MC58

45.402

100

0.485
  ssb Glaesserella parasuis strain SC1401

41.304

100

0.466

Multiple sequence alignment