Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM2010_RS08870 Genome accession   NZ_CP011805
Coordinates   1855119..1855676 (-) Length   185 a.a.
NCBI ID   WP_047806755.1    Uniprot ID   A0A0G3X8D8
Organism   Pelagerythrobacter marensis strain KCTC 22370     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1850119..1860676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM2010_RS08835 - 1850612..1850920 (-) 309 WP_156178728.1 hypothetical protein -
  AM2010_RS08840 (AM2010_1745) - 1851053..1851457 (-) 405 WP_047806751.1 ACT domain-containing protein -
  AM2010_RS08845 (AM2010_1746) hslU 1851457..1852758 (-) 1302 WP_047807846.1 ATP-dependent protease ATPase subunit HslU -
  AM2010_RS08850 (AM2010_1747) hslV 1852785..1853345 (-) 561 WP_047806752.1 ATP-dependent protease subunit HslV -
  AM2010_RS08855 (AM2010_1748) - 1853397..1853867 (-) 471 WP_047806753.1 outer membrane protein assembly factor BamE -
  AM2010_RS08860 (AM2010_1749) - 1854110..1854553 (+) 444 WP_236699494.1 ubiquinol-cytochrome C chaperone family protein -
  AM2010_RS08865 (AM2010_1750) - 1854550..1855074 (+) 525 WP_053044027.1 YceD family protein -
  AM2010_RS08870 (AM2010_1751) ssb 1855119..1855676 (-) 558 WP_047806755.1 single-stranded DNA-binding protein Machinery gene
  AM2010_RS08875 (AM2010_1752) - 1855782..1856246 (-) 465 WP_047806756.1 Rrf2 family transcriptional regulator -
  AM2010_RS08880 (AM2010_1753) - 1856348..1856758 (-) 411 WP_047806757.1 nuclear transport factor 2 family protein -
  AM2010_RS08885 (AM2010_1754) ndk 1856899..1857321 (-) 423 WP_047806758.1 nucleoside-diphosphate kinase -
  AM2010_RS08890 (AM2010_1755) - 1857419..1857913 (-) 495 WP_047806759.1 hypothetical protein -
  AM2010_RS08895 (AM2010_1756) - 1857972..1858415 (-) 444 WP_047806760.1 DNA polymerase III subunit chi -
  AM2010_RS08900 (AM2010_1757) - 1858426..1859883 (-) 1458 WP_047806761.1 leucyl aminopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18958.53 Da        Isoelectric Point: 4.9561

>NTDB_id=148820 AM2010_RS08870 WP_047806755.1 1855119..1855676(-) (ssb) [Pelagerythrobacter marensis strain KCTC 22370]
MAGSLNKVMLIGNLGADPEVREFQNGGAVCNLRIATSEQWKDRNTGERQERTEWHSVAIFSEGLINVAKNYLRKGSKVFV
EGQLQTRKWQDQNGQDRYSTEIVLRGFTGTLTMLDGPPGAGGGGGGQRSGGGNWDRGSSGGGSGGGASGGGWNQGGGAGS
SGGSVGGGAASGGSNYDDLDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=148820 AM2010_RS08870 WP_047806755.1 1855119..1855676(-) (ssb) [Pelagerythrobacter marensis strain KCTC 22370]
ATGGCGGGCAGCCTCAACAAAGTCATGCTGATCGGCAATCTCGGCGCCGATCCCGAAGTACGCGAATTTCAGAACGGCGG
CGCGGTCTGCAACTTGCGCATTGCCACCAGCGAGCAGTGGAAAGACCGCAACACCGGCGAACGTCAGGAACGGACCGAGT
GGCATAGCGTCGCGATCTTTTCCGAAGGGCTGATCAACGTTGCGAAGAACTATCTGCGCAAGGGTTCCAAGGTCTTTGTC
GAAGGGCAGTTGCAGACCCGCAAGTGGCAGGACCAGAACGGTCAGGATCGCTATTCGACGGAAATCGTGCTGCGCGGCTT
CACCGGAACGCTAACGATGCTCGACGGTCCTCCCGGTGCCGGGGGCGGTGGTGGTGGCCAGCGCAGCGGCGGTGGCAACT
GGGATCGTGGTTCGTCCGGCGGTGGTAGCGGCGGCGGCGCAAGCGGCGGCGGCTGGAACCAGGGCGGCGGTGCAGGATCG
AGCGGCGGCTCAGTCGGCGGCGGCGCTGCGTCCGGCGGTTCCAATTACGACGATCTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3X8D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.168

100

0.497
  ssb Vibrio cholerae strain A1552

48.128

100

0.486
  ssb Neisseria gonorrhoeae MS11

39.037

100

0.395
  ssb Neisseria meningitidis MC58

38.503

100

0.389

Multiple sequence alignment