Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | VVCECT4999_RS05485 | Genome accession | NZ_CP014636 |
| Coordinates | 1159488..1160492 (+) | Length | 334 a.a. |
| NCBI ID | WP_011150787.1 | Uniprot ID | Q7MJ78 |
| Organism | Vibrio vulnificus strain CECT 4999 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1154488..1165492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VVCECT4999_RS05465 (VVCECT4999_05400) | - | 1155258..1156124 (-) | 867 | WP_039446684.1 | DUF72 domain-containing protein | - |
| VVCECT4999_RS05470 (VVCECT4999_05405) | aspS | 1156396..1158174 (+) | 1779 | WP_039446530.1 | aspartate--tRNA ligase | - |
| VVCECT4999_RS05475 (VVCECT4999_05410) | ruvC | 1158241..1158762 (+) | 522 | WP_011080036.1 | crossover junction endodeoxyribonuclease RuvC | - |
| VVCECT4999_RS05480 (VVCECT4999_05415) | ruvA | 1158852..1159466 (+) | 615 | WP_017421973.1 | Holliday junction branch migration protein RuvA | - |
| VVCECT4999_RS05485 (VVCECT4999_05420) | ruvB | 1159488..1160492 (+) | 1005 | WP_011150787.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| VVCECT4999_RS05490 (VVCECT4999_05425) | cydA | 1160955..1162541 (+) | 1587 | WP_013571418.1 | cytochrome ubiquinol oxidase subunit I | - |
| VVCECT4999_RS05495 (VVCECT4999_05430) | cydB | 1162558..1163694 (+) | 1137 | WP_039446532.1 | cytochrome d ubiquinol oxidase subunit II | - |
| VVCECT4999_RS05500 (VVCECT4999_05435) | cydX | 1163707..1163814 (+) | 108 | WP_000270284.1 | cytochrome bd-I oxidase subunit CydX | - |
| VVCECT4999_RS05505 (VVCECT4999_05440) | ybgE | 1163807..1164109 (+) | 303 | WP_039446533.1 | cyd operon protein YbgE | - |
| VVCECT4999_RS05510 (VVCECT4999_05445) | ybgC | 1164254..1164673 (+) | 420 | WP_039446535.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| VVCECT4999_RS05515 (VVCECT4999_05450) | tolQ | 1164663..1165346 (+) | 684 | WP_011080044.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37140.58 Da Isoelectric Point: 4.8170
>NTDB_id=148791 VVCECT4999_RS05485 WP_011150787.1 1159488..1160492(+) (ruvB) [Vibrio vulnificus strain CECT 4999]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG
NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG
NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=148791 VVCECT4999_RS05485 WP_011150787.1 1159488..1160492(+) (ruvB) [Vibrio vulnificus strain CECT 4999]
ATGATTGAAGCAGATCGCTTAATTGCTCCGGAAAATCCCGCCTTTCGTGATGAAGATGTGATTGACCGTGCGATACGACC
AAAGAAACTGGCTGATTACCAAGGCCAAGATCACGTACGTGATCAAATGGAAATTTTTATTAAAGCCGCGCAATTGCGTA
ACGAAGCGCTCGACCATTTATTGATTTTTGGCCCTCCAGGTTTGGGTAAAACCACCTTAGCGAACATTGTTGCAAACGAG
ATGGGTGTAAATATTCGCACCACGTCAGGCCCGGTGTTAGAAAAAGCGGGGGATTTAGCGGCCTTGCTGACCAATCTTGA
AGAAAACGACGTGCTCTTCATTGATGAGATACACCGACTCAGTCCGATGGTGGAAGAAGTGCTGTATCCAGCCATGGAAG
ATTACCAATTGGATATTATGATTGGTGAAGGCCCTGCTGCACGTTCAATCAAAATCGACTTGCCGCCCTTTACGCTAATT
GGTGCAACCACTCGCGCCGGCTCACTGACGTCCCCTCTGCGTGATCGTTTTGGTATTACCCAGCGTTTGGAGTATTACAA
AATTCCTGATCTGCAGAATATCGTGCAACGCAGTGCTGACTGCTTGGGGCTTTCCATGGAAGCGGAAGGGGCATTAGAGG
TGGCGCGTCGTGCGCGTGGTACACCACGTATTGCCAATCGCTTGTTGCGCCGCGTGCGCGATTTTGCCGAAGTCAAAGGC
AATGGTCACATCTGTGCAGATACCGCAGACAAAGCGCTCAACATGCTTGATGTGGACTCGAAAGGTTTTGATTACATGGA
CCGCAAGTTGCTGTTGGCCATCATGGAGAAATTTGGTGGTGGTCCGGTTGGCTTAGATAACATGGCAGCTGCGATCGGTG
AAGAGAAAGATACGATTGAAGATGTGTTAGAGCCATATTTGATTCAGCAAGGTTATTTACAACGCACGCCTCGAGGGCGA
ATCGCAACCGATCGGGCGTATCTTCATTTCGGAATTGAAAAGTAA
ATGATTGAAGCAGATCGCTTAATTGCTCCGGAAAATCCCGCCTTTCGTGATGAAGATGTGATTGACCGTGCGATACGACC
AAAGAAACTGGCTGATTACCAAGGCCAAGATCACGTACGTGATCAAATGGAAATTTTTATTAAAGCCGCGCAATTGCGTA
ACGAAGCGCTCGACCATTTATTGATTTTTGGCCCTCCAGGTTTGGGTAAAACCACCTTAGCGAACATTGTTGCAAACGAG
ATGGGTGTAAATATTCGCACCACGTCAGGCCCGGTGTTAGAAAAAGCGGGGGATTTAGCGGCCTTGCTGACCAATCTTGA
AGAAAACGACGTGCTCTTCATTGATGAGATACACCGACTCAGTCCGATGGTGGAAGAAGTGCTGTATCCAGCCATGGAAG
ATTACCAATTGGATATTATGATTGGTGAAGGCCCTGCTGCACGTTCAATCAAAATCGACTTGCCGCCCTTTACGCTAATT
GGTGCAACCACTCGCGCCGGCTCACTGACGTCCCCTCTGCGTGATCGTTTTGGTATTACCCAGCGTTTGGAGTATTACAA
AATTCCTGATCTGCAGAATATCGTGCAACGCAGTGCTGACTGCTTGGGGCTTTCCATGGAAGCGGAAGGGGCATTAGAGG
TGGCGCGTCGTGCGCGTGGTACACCACGTATTGCCAATCGCTTGTTGCGCCGCGTGCGCGATTTTGCCGAAGTCAAAGGC
AATGGTCACATCTGTGCAGATACCGCAGACAAAGCGCTCAACATGCTTGATGTGGACTCGAAAGGTTTTGATTACATGGA
CCGCAAGTTGCTGTTGGCCATCATGGAGAAATTTGGTGGTGGTCCGGTTGGCTTAGATAACATGGCAGCTGCGATCGGTG
AAGAGAAAGATACGATTGAAGATGTGTTAGAGCCATATTTGATTCAGCAAGGTTATTTACAACGCACGCCTCGAGGGCGA
ATCGCAACCGATCGGGCGTATCTTCATTTCGGAATTGAAAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.094 |
98.503 |
0.602 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.443 |
96.707 |
0.575 |
| ruvB | Streptococcus pneumoniae R6 |
59.443 |
96.707 |
0.575 |
| ruvB | Streptococcus pneumoniae D39 |
59.443 |
96.707 |
0.575 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.515 |
0.509 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |