Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VVCECT4999_RS00710 Genome accession   NZ_CP014636
Coordinates   144333..144800 (+) Length   155 a.a.
NCBI ID   WP_025787122.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139333..149800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS00685 (VVCECT4999_00660) istB 140352..141092 (+) 741 WP_011988345.1 IS21-like element ISVch3 family helper ATPase IstB -
  VVCECT4999_RS00690 (VVCECT4999_00665) - 141157..141954 (-) 798 WP_237282395.1 hypothetical protein -
  VVCECT4999_RS00695 (VVCECT4999_00670) - 142250..142951 (-) 702 WP_235424810.1 DUF4276 family protein -
  VVCECT4999_RS00700 (VVCECT4999_00675) - 142912..144015 (-) 1104 WP_039451002.1 AAA family ATPase -
  VVCECT4999_RS00710 (VVCECT4999_00685) radC 144333..144800 (+) 468 WP_025787122.1 RadC family protein Machinery gene
  VVCECT4999_RS00715 (VVCECT4999_00690) - 144797..145246 (+) 450 WP_038941539.1 DUF2787 family protein -
  VVCECT4999_RS00720 (VVCECT4999_00695) - 145285..145716 (+) 432 WP_039450997.1 DUF2787 family protein -
  VVCECT4999_RS00725 (VVCECT4999_00700) - 145724..146062 (-) 339 WP_039450995.1 YkvA family protein -
  VVCECT4999_RS00730 (VVCECT4999_00705) - 146202..146453 (+) 252 WP_004724214.1 hypothetical protein -
  VVCECT4999_RS00735 (VVCECT4999_00710) - 146638..147606 (+) 969 WP_088899937.1 helix-turn-helix transcriptional regulator -
  VVCECT4999_RS00740 (VVCECT4999_00715) - 147603..147824 (-) 222 WP_039450991.1 helix-turn-helix transcriptional regulator -
  VVCECT4999_RS00745 (VVCECT4999_00720) - 147902..148891 (+) 990 WP_039450988.1 GTPase family protein -
  VVCECT4999_RS00750 (VVCECT4999_00725) - 149002..149448 (+) 447 WP_039450986.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17242.65 Da        Isoelectric Point: 6.2210

>NTDB_id=148754 VVCECT4999_RS00710 WP_025787122.1 144333..144800(+) (radC) [Vibrio vulnificus strain CECT 4999]
MRENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTID
SASVYPREVLKAALKVNAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL

Nucleotide


Download         Length: 468 bp        

>NTDB_id=148754 VVCECT4999_RS00710 WP_025787122.1 144333..144800(+) (radC) [Vibrio vulnificus strain CECT 4999]
ATGCGCGAAAACAACTACTATTTTGATGGGCCTGTTACGGCGGACAGGGTGCTCGATGCGGCCGCAGAAATCCTTGCTGC
ACGCGCCCTCCGAGGCGATCAATATTGCAATCCCGAAGCAACAAAAACCTATTTATCTTGCAAATTAAAACACCATGAAA
GAGAGGTGTTTGCGGTGATGTTTCTAGATAATCAGCATCGCCTTATTGCCTTTGAAGAGCTCTTCTTTGGCACAATTGAT
TCGGCAAGTGTTTATCCCCGAGAAGTCCTCAAAGCGGCTTTAAAAGTCAATGCCGCCGCACTCATCTTTGCTCACAATCA
CCCTTCTGGCGATGCCACACCTTCCCAAGCCGATAAACAAATTACGCAAAGGCTTAAAGAGGCTTTAGCGCTGGTGGACA
TTCGAGTTCTTGATCATATCGTGGTTGGTGATAGCGCCATTTCTTTTGCAGAAAGGGGGCTACTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.333

77.419

0.452

Multiple sequence alignment