Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   AWV81_RS14295 Genome accession   NZ_CP014471
Coordinates   2636007..2636702 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2631007..2641702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS14270 (AWV81_14260) minD 2631943..2632749 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  AWV81_RS14275 (AWV81_14265) minC 2632751..2633431 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  AWV81_RS14280 (AWV81_14270) mreD 2633484..2634002 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  AWV81_RS14285 (AWV81_14275) mreC 2633999..2634871 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  AWV81_RS14290 (AWV81_14280) mreB 2634902..2635915 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AWV81_RS14295 (AWV81_14285) ysxA/radC 2636007..2636702 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  AWV81_RS14300 (AWV81_14290) maf 2636739..2637308 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  AWV81_RS14305 (AWV81_14295) spoIIB 2637461..2638459 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  AWV81_RS14310 (AWV81_14300) comC 2638593..2639339 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  AWV81_RS14315 (AWV81_14305) folC 2639479..2640771 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=147809 AWV81_RS14295 WP_014480455.1 2636007..2636702(-) (ysxA/radC) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=147809 AWV81_RS14295 WP_014480455.1 2636007..2636702(-) (ysxA/radC) [Bacillus subtilis subsp. natto strain CGMCC 2108]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424