Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABH13_RS19575 Genome accession   NZ_CP011686
Coordinates   3993153..3993671 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain G341     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3988153..3998671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS19545 (ABH13_3968) - 3989355..3989735 (-) 381 WP_047936369.1 VOC family protein -
  ABH13_RS19550 (ABH13_3969) - 3989792..3990730 (-) 939 WP_047936370.1 LacI family DNA-binding transcriptional regulator -
  ABH13_RS19555 (ABH13_3970) xth 3990793..3991551 (-) 759 WP_047936371.1 exodeoxyribonuclease III -
  ABH13_RS19560 (ABH13_3971) - 3991548..3992105 (-) 558 WP_047936372.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ABH13_RS19565 (ABH13_3972) - 3992102..3992683 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  ABH13_RS19570 (ABH13_3973) rpsR 3992870..3993109 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  ABH13_RS19575 (ABH13_3974) ssbA 3993153..3993671 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABH13_RS19580 (ABH13_3975) rpsF 3993711..3993998 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  ABH13_RS19585 (ABH13_3976) ychF 3994110..3995210 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  ABH13_RS19590 (ABH13_3977) - 3995337..3997340 (-) 2004 WP_047936373.1 molybdopterin-dependent oxidoreductase -
  ABH13_RS19595 (ABH13_3978) - 3997387..3997593 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=147491 ABH13_RS19575 WP_004392979.1 3993153..3993671(-) (ssbA) [Bacillus velezensis strain G341]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=147491 ABH13_RS19575 WP_004392979.1 3993153..3993671(-) (ssbA) [Bacillus velezensis strain G341]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment