Detailed information NTG0146945

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PGR6_RS24505
• Genome accession: NZ_CP011567
• Coordinates: 5540307..5541653 (+)
• Length: 448 a.a.
• NCBI ID: WP_064620439.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GR 6-02
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5535307..5546653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGR6_RS24480 (PGR6_49340)	pgeF	5535512..5536234 (-)	723	WP_064620427.1	peptidoglycan editing factor PgeF	-
PGR6_RS24485 (PGR6_49350)	rluD	5536231..5537193 (-)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PGR6_RS24490 (PGR6_49360)	-	5537345..5538361 (+)	1017	WP_064620430.1	outer membrane protein assembly factor BamD	-
PGR6_RS24495 (PGR6_49370)	-	5538498..5538731 (+)	234	WP_064620433.1	PP0621 family protein	-
PGR6_RS24500 (PGR6_49380)	pilS	5538721..5540310 (+)	1590	WP_064620435.1	ATP-binding protein	Regulator
PGR6_RS24505 (PGR6_49390)	pilR	5540307..5541653 (+)	1347	WP_064620439.1	sigma-54 dependent transcriptional regulator	Regulator
PGR6_RS24510 (PGR6_49400)	thiO	5541673..5542773 (-)	1101	WP_064620442.1	glycine oxidase ThiO	-
PGR6_RS24515 (PGR6_49410)	-	5542830..5543231 (-)	402	WP_018925895.1	type IV pilin protein	-
PGR6_RS24520 (PGR6_49420)	-	5543245..5546367 (-)	3123	WP_064620445.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49805.18 Da
• Isoelectric Point: 7.0296

>NTDB_id=146945 PGR6_RS24505 WP_064620439.1 5540307..5541653(+) (pilR) [Pseudomonas sp. GR 6-02]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTSSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=146945 PGR6_RS24505 WP_064620439.1 5540307..5541653(+) (pilR) [Pseudomonas sp. GR 6-02]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTCCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTACTGGCACGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCGCAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACAGCAATAAATGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGCGACTCGCTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTTATCCACGACCAAGGCCCACGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCAGCCCAGGGCGGTACTTTGTTCCTCGACGAAGTGGCT
GACCTACCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACTTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCAGAAGGCAACTGCAACCCGGACGGCGGCGTGCCAGACCTGACACAGATCGATAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5