Detailed information NTG0146908

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PDR5_RS21000
• Genome accession: NZ_CP011566
• Coordinates: 4692196..4694439 (-)
• Length: 747 a.a.
• NCBI ID: WP_064598572.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DR 5-09
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4687196..4699439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDR5_RS20965 (PDR5_42320)	murB	4687597..4688616 (-)	1020	WP_064598566.1	UDP-N-acetylmuramate dehydrogenase	-
PDR5_RS20970 (PDR5_42330)	-	4688613..4689077 (-)	465	WP_064598568.1	low molecular weight protein-tyrosine-phosphatase	-
PDR5_RS20975 (PDR5_42340)	kdsB	4689077..4689841 (-)	765	WP_039770692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PDR5_RS20980 (PDR5_42350)	-	4689838..4690023 (-)	186	WP_003179363.1	Trm112 family protein	-
PDR5_RS20985 (PDR5_42360)	lpxK	4690047..4691057 (-)	1011	WP_064598570.1	tetraacyldisaccharide 4'-kinase	-
PDR5_RS20990 (PDR5_42370)	-	4691057..4691485 (-)	429	WP_039770694.1	biopolymer transporter ExbD	-
PDR5_RS20995 (PDR5_42380)	exbB	4691482..4692117 (-)	636	WP_163976130.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PDR5_RS21000 (PDR5_42390)	comA	4692196..4694439 (-)	2244	WP_064598572.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PDR5_RS21005 (PDR5_42400)	-	4694576..4695094 (+)	519	WP_064598575.1	DUF2062 domain-containing protein	-
PDR5_RS21010 (PDR5_42410)	-	4695149..4695928 (-)	780	WP_064598580.1	ABC transporter permease	-
PDR5_RS21015 (PDR5_42420)	-	4695925..4696857 (-)	933	WP_064598582.1	ABC transporter ATP-binding protein	-
PDR5_RS21020 (PDR5_42430)	-	4696991..4697614 (-)	624	WP_064598584.1	glutathione S-transferase	-
PDR5_RS21025 (PDR5_42440)	-	4697658..4698317 (-)	660	WP_064598586.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 81766.80 Da
• Isoelectric Point: 10.2629

>NTDB_id=146908 PDR5_RS21000 WP_064598572.1 4692196..4694439(-) (comA) [Pseudomonas sp. DR 5-09]
MRTGMMALAVGLLAAVFLPALPPVGLLLVLPWVALMLLPFRSYPLAFLLLGFAWAGFNAQLALNDRLPSRLDGETRWVEG
RVVGLPQSAEGVVRFELADARSRHEKLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWARRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARFGFWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLSIPHVGEGLLWLAGGLIDGLFRALALIAGRWPAWVAESMPGWIVALGCIGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHALLYDSGPRFGDFDVGERVVLPALHKLGVERLDLMLLSHADADHAGGA
LAVAKGLAVSRVISGDPPGLPEALNAEACESGRQWQWDGVAFHLWQWAEAHDSNQRSCVLQIEANGERLLLTGDIDTNAE
RDLLNSALAVPTQWLQAPHHGSRSSSSMALLKVLQPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=146908 PDR5_RS21000 WP_064598572.1 4692196..4694439(-) (comA) [Pseudomonas sp. DR 5-09]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCTGCGGTTTTTTTACCGGCCTTGCCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTACTGCTTGGATTCGCAT
GGGCGGGATTCAACGCGCAACTGGCGTTGAATGATCGACTGCCGTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAGGGC
CGGGTCGTCGGCTTGCCGCAGAGTGCCGAGGGCGTCGTGCGGTTTGAGCTGGCCGATGCGCGCTCGCGTCACGAAAAGCT
GCCGTCGCTGATGCGCCTGGCCTGGTACGCCGGGCCTGAGGTCAAAAGCGGCGAACGCTGGCGATTGGCGGTCAAGCTCA
AGCGTCCCGGTGGCTTGCTCAATCCGGATGCGTTCGATTACGAGGCCTGGCTGCTGGCGCAACGCATTGGTGCTACCGGG
ACGGTGAAGGATGGCCAGCGTCTGGCGCCGGCGCAGTGGGCCCGGCGCGACAGTATTCGCCAGCGCCTGCTTGCCGTTGA
CGCCCAGGGTCGTAACGGCGCCTTGGCCGCGTTGGTGCTCGGCGATGGTTCCGGCCTCAGTCGCGAAGACTGGCAGATCT
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAGCACATCGGGCTGTTGGCAGCGTTGATGTACGCGCTG
GTCGCCGGGTTGGCCCGATTCGGATTTTGGCCGCTGCGTTGGCCCTGGCTGCCCTGGGCGTGCGGTCTGGCATTCACGGC
GGCGCTGGGTTACGGCTTGCTGGCCGGATTCGATGTACCGGTGCGGCGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTGT
GGCGTTTGCGCTTCCGCCACCTCGGTGCATGGTGGCCATTGCTGCTGGCCTTCAATGGCGTGTTGTTGATGGATCCGCTG
GCCAGCTTGCGTCCGGGGTTGTGGCTGTCTTTTGCGGCGGTGGCTGTGTTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAAACCTGGACGCGCGCGCAGTGGCTGATCGCAATCGGATTGTGCCCGGTGCTGCTGGCGTTGAGTC
TGCCGATCAGTCTTAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTCGGGACTTTGTTGCTGTCAATTCCTCATGTCGGCGAAGGGCTGCTGTGGCTGGCCGGCGGACTGATCGATGGATTGTT
CCGGGCGCTGGCCCTGATTGCCGGACGCTGGCCGGCGTGGGTTGCAGAATCGATGCCGGGCTGGATCGTGGCGCTGGGTT
GCATCGGTGCAGTGCTGTTATTGCTGCCCCGAGGCGTTCCTTTGCGCCCGCTGGGCTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCGCCCCGGGAGCGACTGGCCGAAGGCGTGGCGGATGTCTGGCAGCTTGATGTTGGCCAAGGGCTGGCGATTCTGAT
CCGCACGCGCCATCACGCCTTGCTGTACGACAGCGGCCCGCGCTTCGGCGATTTCGATGTCGGCGAGCGGGTGGTGTTGC
CAGCCCTGCACAAGTTGGGCGTCGAGCGACTCGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGTGGTGCA
CTCGCCGTGGCGAAAGGACTGGCCGTCAGTCGGGTCATCAGTGGCGACCCGCCGGGTCTGCCCGAGGCGCTGAACGCCGA
GGCCTGTGAAAGCGGTCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAATGGGCAGAAGCCCATGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAACGGCGAGCGGCTGCTGCTGACCGGTGACATCGACACCAATGCCGAG
CGGGATTTGCTCAACAGCGCGCTGGCGGTTCCGACCCAGTGGCTGCAAGCCCCGCATCACGGCAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGTTTTGCAGCCCCAGGCCGTGCTGATTTCCCGAGGGCAGGGCAACTCGTTCGGCCATCCGCACC
CGACGGTCATTGCCCGTTACCGCAAGCAGGGAATACACATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGCTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.587	96.252	0.602
comA	Ralstonia pseudosolanacearum GMI1000	34.522	100	0.363