Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PDR5_RS20995 Genome accession   NZ_CP011566
Coordinates   4691482..4692117 (-) Length   211 a.a.
NCBI ID   WP_163976130.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4686482..4697117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS20960 (PDR5_42310) - 4686879..4687349 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  PDR5_RS20965 (PDR5_42320) murB 4687597..4688616 (-) 1020 WP_064598566.1 UDP-N-acetylmuramate dehydrogenase -
  PDR5_RS20970 (PDR5_42330) - 4688613..4689077 (-) 465 WP_064598568.1 low molecular weight protein-tyrosine-phosphatase -
  PDR5_RS20975 (PDR5_42340) kdsB 4689077..4689841 (-) 765 WP_039770692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PDR5_RS20980 (PDR5_42350) - 4689838..4690023 (-) 186 WP_003179363.1 Trm112 family protein -
  PDR5_RS20985 (PDR5_42360) lpxK 4690047..4691057 (-) 1011 WP_064598570.1 tetraacyldisaccharide 4'-kinase -
  PDR5_RS20990 (PDR5_42370) - 4691057..4691485 (-) 429 WP_039770694.1 biopolymer transporter ExbD -
  PDR5_RS20995 (PDR5_42380) exbB 4691482..4692117 (-) 636 WP_163976130.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PDR5_RS21000 (PDR5_42390) comA 4692196..4694439 (-) 2244 WP_064598572.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PDR5_RS21005 (PDR5_42400) - 4694576..4695094 (+) 519 WP_064598575.1 DUF2062 domain-containing protein -
  PDR5_RS21010 (PDR5_42410) - 4695149..4695928 (-) 780 WP_064598580.1 ABC transporter permease -
  PDR5_RS21015 (PDR5_42420) - 4695925..4696857 (-) 933 WP_064598582.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.97 Da        Isoelectric Point: 7.3615

>NTDB_id=146907 PDR5_RS20995 WP_163976130.1 4691482..4692117(-) (exbB) [Pseudomonas sp. DR 5-09]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=146907 PDR5_RS20995 WP_163976130.1 4691482..4692117(-) (exbB) [Pseudomonas sp. DR 5-09]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATTGCCGCCATGTCGCCGTTGCTGGGTCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCTGCGGTGCTGGCCGGCGGTATTTCCAAGGCTTTGATCACTACCGCT
GCGGGGCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGACGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment