Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABA10_RS20555 Genome accession   NZ_CP011534
Coordinates   4008598..4009116 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain UD1022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4003598..4014116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS20525 (ABA10_20525) yyaJ 4004103..4005458 (+) 1356 WP_015483979.1 MFS transporter -
  ABA10_RS20530 (ABA10_20530) maa 4005492..4006046 (-) 555 WP_047183517.1 sugar O-acetyltransferase -
  ABA10_RS20535 (ABA10_20535) yyaH 4006062..4006442 (-) 381 WP_015483980.1 VOC family protein -
  ABA10_RS20540 (ABA10_20540) ccpB 4006498..4007433 (-) 936 WP_047183518.1 transcriptional regulator CcpB -
  ABA10_RS20545 (ABA10_20545) xth 4007492..4008250 (-) 759 WP_047183519.1 exodeoxyribonuclease III -
  ABA10_RS20550 (ABA10_20550) rpsR 4008315..4008554 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ABA10_RS20555 (ABA10_20555) ssbA 4008598..4009116 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABA10_RS20560 (ABA10_20560) rpsF 4009157..4009444 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  ABA10_RS20565 (ABA10_20565) ychF 4009555..4010655 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  ABA10_RS20570 (ABA10_20570) yyaE 4010782..4012785 (-) 2004 WP_047183520.1 molybdopterin-dependent oxidoreductase -
  ABA10_RS20575 (ABA10_20575) yyzM 4012836..4013042 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=146781 ABA10_RS20555 WP_003219228.1 4008598..4009116(-) (ssbA) [Bacillus subtilis strain UD1022]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=146781 ABA10_RS20555 WP_003219228.1 4008598..4009116(-) (ssbA) [Bacillus subtilis strain UD1022]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment