Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ABA10_RS12285 | Genome accession | NZ_CP011534 |
| Coordinates | 2402513..2402848 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain UD1022 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2397513..2407848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABA10_RS12265 (ABA10_12265) | gcvT | 2398105..2399193 (-) | 1089 | WP_015384081.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABA10_RS12270 (ABA10_12270) | hepAA | 2399635..2401308 (+) | 1674 | WP_047182869.1 | SNF2-related protein | - |
| ABA10_RS12275 (ABA10_12275) | yqhG | 2401329..2402123 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| ABA10_RS12280 (ABA10_12280) | sinI | 2402306..2402479 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| ABA10_RS12285 (ABA10_12285) | sinR | 2402513..2402848 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ABA10_RS12290 (ABA10_12290) | tasA | 2402941..2403726 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| ABA10_RS12295 (ABA10_12295) | sipW | 2403790..2404362 (-) | 573 | WP_080030740.1 | signal peptidase I SipW | - |
| ABA10_RS12300 (ABA10_12300) | tapA | 2404346..2405107 (-) | 762 | WP_047182870.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABA10_RS12305 (ABA10_12305) | yqzG | 2405377..2405703 (+) | 327 | WP_047183570.1 | YqzG/YhdC family protein | - |
| ABA10_RS12310 (ABA10_12310) | spoIITA | 2405745..2405924 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| ABA10_RS12315 (ABA10_12315) | comGG | 2405996..2406370 (-) | 375 | WP_047182871.1 | ComG operon protein ComGG | Machinery gene |
| ABA10_RS12320 (ABA10_12320) | comGF | 2406371..2406754 (-) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| ABA10_RS12325 (ABA10_12325) | comGE | 2406780..2407127 (-) | 348 | WP_047182872.1 | ComG operon protein 5 | Machinery gene |
| ABA10_RS12330 (ABA10_12330) | comGD | 2407111..2407542 (-) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| ABA10_RS12335 (ABA10_12335) | comGC | 2407532..2407828 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=146744 ABA10_RS12285 WP_003226345.1 2402513..2402848(+) (sinR) [Bacillus subtilis strain UD1022]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=146744 ABA10_RS12285 WP_003226345.1 2402513..2402848(+) (sinR) [Bacillus subtilis strain UD1022]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |