Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   ABA10_RS12325 Genome accession   NZ_CP011534
Coordinates   2406780..2407127 (-) Length   115 a.a.
NCBI ID   WP_047182872.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2401780..2412127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12280 (ABA10_12280) sinI 2402306..2402479 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ABA10_RS12285 (ABA10_12285) sinR 2402513..2402848 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABA10_RS12290 (ABA10_12290) tasA 2402941..2403726 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  ABA10_RS12295 (ABA10_12295) sipW 2403790..2404362 (-) 573 WP_080030740.1 signal peptidase I SipW -
  ABA10_RS12300 (ABA10_12300) tapA 2404346..2405107 (-) 762 WP_047182870.1 amyloid fiber anchoring/assembly protein TapA -
  ABA10_RS12305 (ABA10_12305) yqzG 2405377..2405703 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  ABA10_RS12310 (ABA10_12310) spoIITA 2405745..2405924 (-) 180 WP_003230176.1 YqzE family protein -
  ABA10_RS12315 (ABA10_12315) comGG 2405996..2406370 (-) 375 WP_047182871.1 ComG operon protein ComGG Machinery gene
  ABA10_RS12320 (ABA10_12320) comGF 2406371..2406754 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  ABA10_RS12325 (ABA10_12325) comGE 2406780..2407127 (-) 348 WP_047182872.1 ComG operon protein 5 Machinery gene
  ABA10_RS12330 (ABA10_12330) comGD 2407111..2407542 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  ABA10_RS12335 (ABA10_12335) comGC 2407532..2407828 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ABA10_RS12340 (ABA10_12340) comGB 2407842..2408879 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  ABA10_RS12345 (ABA10_12345) comGA 2408866..2409936 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  ABA10_RS12350 (ABA10_12350) corA 2410346..2411299 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13333.35 Da        Isoelectric Point: 5.1901

>NTDB_id=146747 ABA10_RS12325 WP_047182872.1 2406780..2407127(-) (comGE) [Bacillus subtilis strain UD1022]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLMSDEKMAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKATAYKEKSYCLSILQTEWLHAS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=146747 ABA10_RS12325 WP_047182872.1 2406780..2407127(-) (comGE) [Bacillus subtilis strain UD1022]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCAGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTGATGTCTGATGAAAAAATGGCGGAATCACGAGAAATTGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACGATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGTGAATATCAAAACGTATGTATCAAAGCCACAGCTTATAAAGAAAAATCATATTGCCTCAGCATCCT
GCAGACAGAATGGCTACACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

97.391

100

0.974

Multiple sequence alignment