Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABE85_RS23930 Genome accession   NZ_CP011514
Coordinates   5447803..5448354 (+) Length   183 a.a.
NCBI ID   WP_067280732.1    Uniprot ID   A0A1A9HPM9
Organism   Mitsuaria sp. 7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5442803..5453354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE85_RS23910 (ABE85_23925) - 5443648..5443830 (+) 183 WP_067280725.1 hypothetical protein -
  ABE85_RS23915 (ABE85_23930) - 5444157..5444459 (+) 303 WP_067280727.1 hypothetical protein -
  ABE85_RS23920 (ABE85_23935) recQ 5444611..5446479 (-) 1869 WP_067280729.1 DNA helicase RecQ -
  ABE85_RS23925 (ABE85_23940) - 5446594..5447562 (+) 969 WP_067280730.1 diguanylate cyclase -
  ABE85_RS23930 (ABE85_23945) ssb 5447803..5448354 (+) 552 WP_067280732.1 single-stranded DNA-binding protein Machinery gene
  ABE85_RS23935 (ABE85_23950) - 5448461..5449414 (-) 954 WP_157522845.1 hypothetical protein -
  ABE85_RS23940 (ABE85_23955) - 5450003..5450476 (-) 474 WP_067283463.1 RidA family protein -
  ABE85_RS23945 (ABE85_23960) - 5450517..5451203 (-) 687 WP_067280737.1 YoaK family protein -
  ABE85_RS23950 (ABE85_23965) - 5451200..5451634 (-) 435 WP_067280739.1 DoxX family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19585.55 Da        Isoelectric Point: 5.4181

>NTDB_id=146509 ABE85_RS23930 WP_067280732.1 5447803..5448354(+) (ssb) [Mitsuaria sp. 7]
MASVNKVIILGNLGRDPELRYTPSGSAVCNVSIATTRNWKSREGGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEIIAEQMQLLGGRDGEEGGGGGGGYSREQRGGGQGGGQGGGGSGRDSGDFDAPRAPAPRAAA
PRAPAPAPKAATGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=146509 ABE85_RS23930 WP_067280732.1 5447803..5448354(+) (ssb) [Mitsuaria sp. 7]
ATGGCCTCGGTCAATAAAGTCATCATCCTCGGCAACCTGGGCCGTGATCCCGAACTGCGCTACACGCCGAGTGGCAGCGC
GGTGTGCAACGTGAGCATCGCCACGACGCGCAACTGGAAGAGCCGCGAAGGCGGCGAGCGCCAGGAAGAGACCGAATGGC
ACCGTGTGGTGTTCTACGACCGCCTGGCGGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGTCCGGTCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACCACCGAGATCATCGCCGAGCAGATGCAACT
GCTGGGCGGCCGTGACGGCGAAGAGGGCGGTGGTGGCGGTGGCGGCTACAGCCGCGAACAGCGCGGCGGCGGTCAAGGCG
GTGGCCAGGGCGGCGGCGGCAGTGGTCGCGACAGCGGCGACTTCGACGCTCCGCGCGCGCCGGCGCCCCGCGCGGCAGCT
CCTCGCGCCCCGGCCCCCGCGCCGAAGGCCGCGACCGGCTTCGACGACATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HPM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.619

98.907

0.481
  ssb Vibrio cholerae strain A1552

45.596

100

0.481
  ssb Neisseria meningitidis MC58

48.066

98.907

0.475

Multiple sequence alignment