Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABE82_RS25840 Genome accession   NZ_CP011512
Coordinates   5990163..5990654 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus peoriae strain HS311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5990163..5998810 5990163..5990654 within 0


Gene organization within MGE regions


Location: 5990163..5998810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE82_RS25840 (ABE82_25840) ssbA 5990163..5990654 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  ABE82_RS25845 (ABE82_25845) rpsF 5990704..5990988 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  ABE82_RS25850 (ABE82_25850) - 5991308..5991502 (+) 195 WP_028540980.1 YjzC family protein -
  ABE82_RS25855 (ABE82_25855) - 5991869..5992186 (+) 318 WP_053326514.1 hypothetical protein -
  ABE82_RS25860 (ABE82_25860) - 5992268..5992632 (-) 365 Protein_5195 hypothetical protein -
  ABE82_RS25865 (ABE82_25865) - 5992900..5993160 (+) 261 WP_028540982.1 hypothetical protein -
  ABE82_RS25875 (ABE82_25875) - 5993532..5993738 (-) 207 WP_023991148.1 DUF951 domain-containing protein -
  ABE82_RS25880 (ABE82_25880) - 5993728..5994678 (-) 951 WP_053326515.1 mechanosensitive ion channel family protein -
  ABE82_RS25885 (ABE82_25885) yyaC 5994930..5995535 (+) 606 WP_023991150.1 spore protease YyaC -
  ABE82_RS25890 (ABE82_25890) - 5995489..5996010 (-) 522 WP_023991151.1 DUF4446 family protein -
  ABE82_RS25895 (ABE82_25895) - 5996209..5997051 (-) 843 WP_013312809.1 ParB/RepB/Spo0J family partition protein -
  ABE82_RS25900 (ABE82_25900) - 5997044..5997805 (-) 762 WP_023991152.1 AAA family ATPase -
  ABE82_RS25905 (ABE82_25905) noc 5997992..5998810 (-) 819 WP_013312811.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=146498 ABE82_RS25840 WP_013312801.1 5990163..5990654(-) (ssbA) [Paenibacillus peoriae strain HS311]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=146498 ABE82_RS25840 WP_013312801.1 5990163..5990654(-) (ssbA) [Paenibacillus peoriae strain HS311]
TTGTTGAACCGTGTCATTCTGATCGGTCGCTTGACCAAAGATCCAGAGCTGCGCTATACACCATCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment