Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AA314_RS10930 Genome accession   NZ_CP011509
Coordinates   2687024..2687542 (+) Length   172 a.a.
NCBI ID   WP_047855407.1    Uniprot ID   A0AAC8TC89
Organism   Archangium gephyra strain DSM 2261     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2682024..2692542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA314_RS10920 (AA314_02253) - 2683563..2684354 (+) 792 WP_047855406.1 SDR family oxidoreductase -
  AA314_RS10925 (AA314_02255) dacB 2684598..2686838 (+) 2241 WP_047861736.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase -
  AA314_RS10930 (AA314_02256) ssb 2687024..2687542 (+) 519 WP_047855407.1 single-stranded DNA-binding protein Machinery gene
  AA314_RS10935 (AA314_02257) - 2687653..2688378 (-) 726 WP_047855408.1 succinate dehydrogenase -
  AA314_RS10940 (AA314_02258) - 2688624..2689523 (+) 900 WP_047855409.1 Hsp33 family molecular chaperone HslO -
  AA314_RS10945 (AA314_02259) - 2689623..2690297 (+) 675 WP_245682427.1 phosphoribosyltransferase -
  AA314_RS10950 (AA314_02260) selB 2690322..2692238 (+) 1917 WP_047855410.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17928.62 Da        Isoelectric Point: 5.2866

>NTDB_id=146429 AA314_RS10930 WP_047855407.1 2687024..2687542(+) (ssb) [Archangium gephyra strain DSM 2261]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGAGAGGGGGGGGRAGGYSQQRGGGQQQGGYDDYGPPPMGMDEGGGG
GGNGGGDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=146429 AA314_RS10930 WP_047855407.1 2687024..2687542(+) (ssb) [Archangium gephyra strain DSM 2261]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGACCCGGAGGTACGTTTCACCCCGGGCGGCCA
GGCAGTCGCCAACTTCCGCATCGCGACCAGCGACACCTGGACGGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTGGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGCCGTCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGGGAGTGGACCGACAAGGAGAATCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGATGGCGCCGGAGCGGGCGCGGGCGGTGGCGGCGGTGGTGGTGGCCGCGCGGGTGGCTACTCGCAGC
AGCGGGGCGGTGGCCAGCAGCAGGGCGGGTACGACGACTACGGTCCGCCCCCCATGGGCATGGACGAGGGTGGCGGCGGT
GGCGGCAACGGTGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.946

100

0.494
  ssb Neisseria meningitidis MC58

42.775

100

0.43
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.43
  ssb Glaesserella parasuis strain SC1401

40.782

100

0.424

Multiple sequence alignment