Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | AA976_RS00485 | Genome accession | NZ_CP011484 |
| Coordinates | 89867..90838 (+) | Length | 323 a.a. |
| NCBI ID | WP_064436171.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CC33C | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 84867..95838
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA976_RS00455 (AA976_00455) | panD | 86279..86632 (+) | 354 | WP_000142288.1 | aspartate 1-decarboxylase | - |
| AA976_RS00460 (AA976_00460) | - | 86635..86937 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA976_RS00465 (AA976_00465) | - | 86931..87935 (+) | 1005 | WP_064436168.1 | PDZ domain-containing protein | - |
| AA976_RS00470 (AA976_00470) | comB6 | 87943..88998 (+) | 1056 | WP_064436169.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA976_RS00475 (AA976_00475) | comB7 | 89014..89127 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| AA976_RS00480 (AA976_00480) | comB8 | 89124..89867 (+) | 744 | WP_064436170.1 | type IV secretion system protein | Machinery gene |
| AA976_RS00485 (AA976_00485) | comB9 | 89867..90838 (+) | 972 | WP_064436171.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA976_RS00490 (AA976_00490) | comB10 | 90831..91967 (+) | 1137 | WP_064436172.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA976_RS00495 (AA976_00495) | - | 92037..93449 (+) | 1413 | WP_064436173.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| AA976_RS00500 (AA976_00500) | gmd | 93490..94635 (+) | 1146 | WP_064436174.1 | GDP-mannose 4,6-dehydratase | - |
| AA976_RS00505 (AA976_00505) | - | 94628..95560 (+) | 933 | WP_064436175.1 | GDP-L-fucose synthase family protein | - |
| AA976_RS08870 | - | 95588..95765 (-) | 178 | Protein_96 | anthranilate synthase component I | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37227.91 Da Isoelectric Point: 9.4679
>NTDB_id=146234 AA976_RS00485 WP_064436171.1 89867..90838(+) (comB9) [Helicobacter pylori strain CC33C]
MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILENAPTNNNKPLKEEKEETKTPEEEAIIIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWACSK
KSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKRS
KGE
MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENILENAPTNNNKPLKEEKEETKTPEEEAIIIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWACSK
KSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKRS
KGE
Nucleotide
Download Length: 972 bp
>NTDB_id=146234 AA976_RS00485 WP_064436171.1 89867..90838(+) (comB9) [Helicobacter pylori strain CC33C]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGACTTTTTGGAAGAAGC
GAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATATCCTTGAAAATGCTCCCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGCGATAATTATTGGCGATAACACTAATGCGATGAAAATCG
TTAAAAAAGACATCCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCTAAA
AAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAGATTAGC
GCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACA
TTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAGGAGC
AAAGGTGAATAA
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGACTTTTTGGAAGAAGC
GAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATATCCTTGAAAATGCTCCCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGCGATAATTATTGGCGATAACACTAATGCGATGAAAATCG
TTAAAAAAGACATCCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCTAAA
AAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAGATTAGC
GCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATTACA
TTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAGGAGC
AAAGGTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
93.865 |
100 |
0.947 |