Detailed information NTG0146231

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: AA976_RS00470
• Genome accession: NZ_CP011484
• Coordinates: 87943..88998 (+)
• Length: 351 a.a.
• NCBI ID: WP_064436169.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain CC33C
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 82943..93998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA976_RS08865	-	83003..83260 (-)	258	WP_064436166.1	hypothetical protein	-
AA976_RS00440 (AA976_00440)	-	83371..83784 (+)	414	WP_001023005.1	universal stress protein	-
AA976_RS00445 (AA976_00445)	-	83786..84061 (+)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
AA976_RS00450 (AA976_00450)	-	84061..86289 (+)	2229	WP_064436167.1	AAA family ATPase	-
AA976_RS00455 (AA976_00455)	panD	86279..86632 (+)	354	WP_000142288.1	aspartate 1-decarboxylase	-
AA976_RS00460 (AA976_00460)	-	86635..86937 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
AA976_RS00465 (AA976_00465)	-	86931..87935 (+)	1005	WP_064436168.1	PDZ domain-containing protein	-
AA976_RS00470 (AA976_00470)	comB6	87943..88998 (+)	1056	WP_064436169.1	P-type conjugative transfer protein TrbL	Machinery gene
AA976_RS00475 (AA976_00475)	comB7	89014..89127 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
AA976_RS00480 (AA976_00480)	comB8	89124..89867 (+)	744	WP_064436170.1	type IV secretion system protein	Machinery gene
AA976_RS00485 (AA976_00485)	comB9	89867..90838 (+)	972	WP_064436171.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
AA976_RS00490 (AA976_00490)	comB10	90831..91967 (+)	1137	WP_064436172.1	DNA type IV secretion system protein ComB10	Machinery gene
AA976_RS00495 (AA976_00495)	-	92037..93449 (+)	1413	WP_064436173.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39772.72 Da
• Isoelectric Point: 9.0413

>NTDB_id=146231 AA976_RS00470 WP_064436169.1 87943..88998(+) (comB6) [Helicobacter pylori strain CC33C]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAIALAFMLFAYRSLKEQNFFSASTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=146231 AA976_RS00470 WP_064436169.1 87943..88998(+) (comB6) [Helicobacter pylori strain CC33C]
ATGAAACATGACGCTTATGAAATCATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGATCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCACGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	91.738	100	0.917