Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | AA971_RS00170 | Genome accession | NZ_CP011482 |
| Coordinates | 33754..34884 (+) | Length | 376 a.a. |
| NCBI ID | WP_064431762.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain L7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 28754..39884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA971_RS00135 (AA971_00125) | panD | 29196..29549 (+) | 354 | WP_021307646.1 | aspartate 1-decarboxylase | - |
| AA971_RS00140 (AA971_00130) | - | 29552..29845 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA971_RS00145 (AA971_00135) | - | 29845..30840 (+) | 996 | WP_064431758.1 | PDZ domain-containing protein | - |
| AA971_RS00150 (AA971_00140) | comB6 | 30848..31903 (+) | 1056 | WP_064431759.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA971_RS00155 (AA971_00145) | comB7 | 31919..32044 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| AA971_RS00160 (AA971_00150) | comB8 | 32041..32784 (+) | 744 | WP_064431760.1 | type IV secretion system protein | Machinery gene |
| AA971_RS00165 (AA971_00155) | comB9 | 32784..33761 (+) | 978 | WP_064431761.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA971_RS00170 (AA971_00160) | comB10 | 33754..34884 (+) | 1131 | WP_064431762.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA971_RS00175 (AA971_00165) | - | 34954..36366 (+) | 1413 | WP_064431763.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| AA971_RS00180 (AA971_00170) | gmd | 36395..37540 (+) | 1146 | WP_064431764.1 | GDP-mannose 4,6-dehydratase | - |
| AA971_RS00185 (AA971_00175) | - | 37533..38465 (+) | 933 | WP_064431765.1 | GDP-L-fucose synthase family protein | - |
| AA971_RS00190 (AA971_00180) | hypE | 38775..39773 (-) | 999 | WP_064431766.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41917.39 Da Isoelectric Point: 9.7760
>NTDB_id=146193 AA971_RS00170 WP_064431762.1 33754..34884(+) (comB10) [Helicobacter pylori strain L7]
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVVREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVVREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=146193 AA971_RS00170 WP_064431762.1 33754..34884(+) (comB10) [Helicobacter pylori strain L7]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAATCTTTTGAATGACGATGAAGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTCAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGAAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAATAATAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGGTTAG
AGAGGGAAGTAGAGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAATCTTTTGAATGACGATGAAGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTCAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGAAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAATAATAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGGTTAG
AGAGGGAAGTAGAGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.277 |
100 |
0.963 |