Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   AA971_RS00160 Genome accession   NZ_CP011482
Coordinates   32041..32784 (+) Length   247 a.a.
NCBI ID   WP_064431760.1    Uniprot ID   -
Organism   Helicobacter pylori strain L7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 27041..37784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA971_RS00135 (AA971_00125) panD 29196..29549 (+) 354 WP_021307646.1 aspartate 1-decarboxylase -
  AA971_RS00140 (AA971_00130) - 29552..29845 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  AA971_RS00145 (AA971_00135) - 29845..30840 (+) 996 WP_064431758.1 PDZ domain-containing protein -
  AA971_RS00150 (AA971_00140) comB6 30848..31903 (+) 1056 WP_064431759.1 P-type conjugative transfer protein TrbL Machinery gene
  AA971_RS00155 (AA971_00145) comB7 31919..32044 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  AA971_RS00160 (AA971_00150) comB8 32041..32784 (+) 744 WP_064431760.1 type IV secretion system protein Machinery gene
  AA971_RS00165 (AA971_00155) comB9 32784..33761 (+) 978 WP_064431761.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  AA971_RS00170 (AA971_00160) comB10 33754..34884 (+) 1131 WP_064431762.1 DNA type IV secretion system protein ComB10 Machinery gene
  AA971_RS00175 (AA971_00165) - 34954..36366 (+) 1413 WP_064431763.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  AA971_RS00180 (AA971_00170) gmd 36395..37540 (+) 1146 WP_064431764.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28782.07 Da        Isoelectric Point: 8.6455

>NTDB_id=146191 AA971_RS00160 WP_064431760.1 32041..32784(+) (comB8) [Helicobacter pylori strain L7]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLCLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQNHLEREVHIVNIAIYQQDNNPIASVSIVAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=146191 AA971_RS00160 WP_064431760.1 32041..32784(+) (comB8) [Helicobacter pylori strain L7]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCAGTGAATGATTTGGACATGCAAAGCGTGTTCAGGCTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTATGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAGGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAACCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGTGGCTAAACTTTTGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATT
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment