Detailed information NTG0146192

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: AA971_RS00165
• Genome accession: NZ_CP011482
• Coordinates: 32784..33761 (+)
• Length: 325 a.a.
• NCBI ID: WP_064431761.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain L7
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27784..38761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AA971_RS00135 (AA971_00125)	panD	29196..29549 (+)	354	WP_021307646.1	aspartate 1-decarboxylase	-
AA971_RS00140 (AA971_00130)	-	29552..29845 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
AA971_RS00145 (AA971_00135)	-	29845..30840 (+)	996	WP_064431758.1	PDZ domain-containing protein	-
AA971_RS00150 (AA971_00140)	comB6	30848..31903 (+)	1056	WP_064431759.1	P-type conjugative transfer protein TrbL	Machinery gene
AA971_RS00155 (AA971_00145)	comB7	31919..32044 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
AA971_RS00160 (AA971_00150)	comB8	32041..32784 (+)	744	WP_064431760.1	type IV secretion system protein	Machinery gene
AA971_RS00165 (AA971_00155)	comB9	32784..33761 (+)	978	WP_064431761.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
AA971_RS00170 (AA971_00160)	comB10	33754..34884 (+)	1131	WP_064431762.1	DNA type IV secretion system protein ComB10	Machinery gene
AA971_RS00175 (AA971_00165)	-	34954..36366 (+)	1413	WP_064431763.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
AA971_RS00180 (AA971_00170)	gmd	36395..37540 (+)	1146	WP_064431764.1	GDP-mannose 4,6-dehydratase	-
AA971_RS00185 (AA971_00175)	-	37533..38465 (+)	933	WP_064431765.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37468.04 Da
• Isoelectric Point: 9.3370

>NTDB_id=146192 AA971_RS00165 WP_064431761.1 32784..33761(+) (comB9) [Helicobacter pylori strain L7]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQAFIEDKN
YYSNAFMKPQNKENKENTFENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGIC
SKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=146192 AA971_RS00165 WP_064431761.1 32784..33761(+) (comB9) [Helicobacter pylori strain L7]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGCTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATAAAGAAAATACCTTTGAAAATGCCCCCACAAACAACAA
GCCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAACGCAATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGT
TCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.012	100	0.963