Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | AA971_RS00155 | Genome accession | NZ_CP011482 |
| Coordinates | 31919..32044 (+) | Length | 41 a.a. |
| NCBI ID | WP_001217874.1 | Uniprot ID | A0AAI7ZWZ6 |
| Organism | Helicobacter pylori strain L7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 26919..37044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA971_RS00130 (AA971_00120) | - | 26981..29206 (+) | 2226 | WP_064431757.1 | AAA family ATPase | - |
| AA971_RS00135 (AA971_00125) | panD | 29196..29549 (+) | 354 | WP_021307646.1 | aspartate 1-decarboxylase | - |
| AA971_RS00140 (AA971_00130) | - | 29552..29845 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| AA971_RS00145 (AA971_00135) | - | 29845..30840 (+) | 996 | WP_064431758.1 | PDZ domain-containing protein | - |
| AA971_RS00150 (AA971_00140) | comB6 | 30848..31903 (+) | 1056 | WP_064431759.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| AA971_RS00155 (AA971_00145) | comB7 | 31919..32044 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| AA971_RS00160 (AA971_00150) | comB8 | 32041..32784 (+) | 744 | WP_064431760.1 | type IV secretion system protein | Machinery gene |
| AA971_RS00165 (AA971_00155) | comB9 | 32784..33761 (+) | 978 | WP_064431761.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| AA971_RS00170 (AA971_00160) | comB10 | 33754..34884 (+) | 1131 | WP_064431762.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| AA971_RS00175 (AA971_00165) | - | 34954..36366 (+) | 1413 | WP_064431763.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 41 a.a. Molecular weight: 4798.82 Da Isoelectric Point: 9.3278
>NTDB_id=146190 AA971_RS00155 WP_001217874.1 31919..32044(+) (comB7) [Helicobacter pylori strain L7]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLHEKLYENRLNLA
Nucleotide
Download Length: 126 bp
>NTDB_id=146190 AA971_RS00155 WP_001217874.1 31919..32044(+) (comB7) [Helicobacter pylori strain L7]
ATGAGAATTTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
ATGAGAATTTTTTTTGTCATTATGGGACTAGTATTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGCATGAAAAGTTATATGAAAACAGGTTGAATCTTGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
87.805 |
100 |
0.878 |