Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMCC21906_RS04625 Genome accession   NZ_CP011477
Coordinates   989728..990246 (+) Length   172 a.a.
NCBI ID   WP_047011190.1    Uniprot ID   -
Organism   Spongiibacter sp. IMCC21906     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 984728..995246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC21906_RS04615 (IMCC21906_00942) uvrA 985296..988145 (-) 2850 WP_047013133.1 excinuclease ABC subunit UvrA -
  IMCC21906_RS04620 (IMCC21906_00943) - 988298..989662 (+) 1365 WP_231580315.1 MFS transporter -
  IMCC21906_RS04625 (IMCC21906_00944) ssb 989728..990246 (+) 519 WP_047011190.1 single-stranded DNA-binding protein Machinery gene
  IMCC21906_RS04630 (IMCC21906_00945) - 990525..991301 (+) 777 WP_047011191.1 sugar nucleotide-binding protein -
  IMCC21906_RS04635 (IMCC21906_00946) moaB 991298..991828 (+) 531 WP_047011192.1 molybdenum cofactor biosynthesis protein B -
  IMCC21906_RS04640 (IMCC21906_00947) glp 991845..993053 (+) 1209 WP_047011193.1 gephyrin-like molybdotransferase Glp -
  IMCC21906_RS04645 (IMCC21906_00948) fabB 993129..994352 (-) 1224 WP_047011194.1 beta-ketoacyl-ACP synthase I -
  IMCC21906_RS04650 (IMCC21906_00949) fabA 994404..994928 (-) 525 WP_047013134.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18748.51 Da        Isoelectric Point: 4.9924

>NTDB_id=146161 IMCC21906_RS04625 WP_047011190.1 989728..990246(+) (ssb) [Spongiibacter sp. IMCC21906]
MARGVNKVIIVGNLGQDPETRYMPSGGAVTNVTVATSENWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVAGEMQMLDSRGGGGGSGSGGYDDYAAPQQQRAPQQSRPAAPRPQSNNTPPPANDPPSS
GGFDDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=146161 IMCC21906_RS04625 WP_047011190.1 989728..990246(+) (ssb) [Spongiibacter sp. IMCC21906]
ATGGCGCGTGGCGTAAACAAAGTAATTATAGTGGGTAATCTAGGTCAGGATCCTGAAACTCGATATATGCCTTCTGGTGG
CGCGGTGACTAACGTGACGGTGGCGACGAGTGAAAACTGGAAAGATAAGCAGACTGGTCAGCCGCAAGAACGAACAGAGT
GGCATCGGGTGGTGTTTTTTAATCGCTTGGCCGAAATTGCGGGTGAGTACCTGAAAAAAGGCTCAAAGGTCTATGTTGAA
GGCTCGCTCCGAACGCGAAAATGGCAGGGGCAGGACGGCCAAGATCGTTACACCACTGAAATTGTCGCGGGTGAAATGCA
AATGCTCGACAGCCGTGGTGGTGGCGGTGGAAGTGGCAGCGGTGGCTATGATGATTATGCTGCTCCACAACAGCAGCGGG
CTCCTCAGCAATCGCGCCCAGCAGCACCTCGGCCCCAGTCGAATAATACGCCTCCACCTGCAAATGATCCTCCTTCCAGC
GGCGGTTTTGACGACTTTGACGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.08

100

0.599
  ssb Vibrio cholerae strain A1552

54.444

100

0.57
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.523
  ssb Neisseria meningitidis MC58

50.847

100

0.523

Multiple sequence alignment