Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VK72_RS27050 Genome accession   NZ_CP011420
Coordinates   6074996..6075487 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa strain ATCC 15970     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 6074996..6083642 6074996..6075487 within 0


Gene organization within MGE regions


Location: 6074996..6083642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK72_RS27050 (VK72_26520) ssbA 6074996..6075487 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  VK72_RS27055 (VK72_26525) rpsF 6075537..6075821 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  VK72_RS27060 (VK72_26530) - 6076140..6076334 (+) 195 WP_013312803.1 YjzC family protein -
  VK72_RS27065 (VK72_26535) - 6076702..6077019 (+) 318 WP_013312804.1 hypothetical protein -
  VK72_RS27070 (VK72_26540) - 6077101..6077466 (-) 366 WP_075155011.1 hypothetical protein -
  VK72_RS27075 (VK72_26545) - 6077732..6077992 (+) 261 WP_023991146.1 hypothetical protein -
  VK72_RS27085 (VK72_26555) - 6078364..6078570 (-) 207 WP_023991148.1 DUF951 domain-containing protein -
  VK72_RS27090 (VK72_26560) - 6078560..6079510 (-) 951 WP_075155012.1 mechanosensitive ion channel family protein -
  VK72_RS27095 (VK72_26565) yyaC 6079762..6080367 (+) 606 WP_023991150.1 spore protease YyaC -
  VK72_RS27100 (VK72_26570) - 6080321..6080842 (-) 522 WP_023991151.1 DUF4446 family protein -
  VK72_RS27105 (VK72_26575) - 6081041..6081883 (-) 843 WP_075155013.1 ParB/RepB/Spo0J family partition protein -
  VK72_RS27110 (VK72_26580) - 6081876..6082637 (-) 762 WP_023991152.1 ParA family protein -
  VK72_RS27115 (VK72_26585) noc 6082824..6083642 (-) 819 WP_013312811.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=145940 VK72_RS27050 WP_013312801.1 6074996..6075487(-) (ssbA) [Paenibacillus polymyxa strain ATCC 15970]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=145940 VK72_RS27050 WP_013312801.1 6074996..6075487(-) (ssbA) [Paenibacillus polymyxa strain ATCC 15970]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment