NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	AYM13_RS08960	Genome accession	NZ_CP014362
Coordinates	1748828..1749514 (-)	Length	228 a.a.
NCBI ID	WP_000692870.1	Uniprot ID	Q8NW77
Organism	Staphylococcus aureus strain USA300-SUR1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1743828..1754514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYM13_RS08915 (AYM13_08710)	rpmA	1744667..1744951 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
AYM13_RS08920 (AYM13_08715)	-	1744963..1745283 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
AYM13_RS08925 (AYM13_08720)	rplU	1745289..1745597 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
AYM13_RS08930 (AYM13_08725)	mreD	1745764..1746294 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
AYM13_RS08935 (AYM13_08730)	mreC	1746294..1747136 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
AYM13_RS08940 (AYM13_08735)	-	1747336..1747455 (-)	120	WP_000840602.1	hypothetical protein	-
AYM13_RS08945 (AYM13_08740)	-	1747529..1748002 (-)	474	WP_001236735.1	DUF4930 family protein	-
AYM13_RS08950	-	1748162..1748359 (+)	198	WP_000025835.1	hypothetical protein	-
AYM13_RS08955 (AYM13_08745)	-	1748476..1748760 (-)	285	WP_000171859.1	hypothetical protein	-
AYM13_RS08960 (AYM13_08750)	ysxA/radC	1748828..1749514 (-)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
AYM13_RS08965 (AYM13_08755)	-	1749511..1750218 (-)	708	WP_000261115.1	A24 family peptidase	-
AYM13_RS08975 (AYM13_08765)	-	1750488..1751759 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
AYM13_RS08980 (AYM13_08770)	-	1751772..1754402 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.28 Da Isoelectric Point: 7.0539

                                >NTDB_id=145657 AYM13_RS08960 WP_000692870.1 1748828..1749514(-) (ysxA/radC) [Staphylococcus aureus strain USA300-SUR1]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=145657 AYM13_RS08960 WP_000692870.1 1748828..1749514(-) (ysxA/radC) [Staphylococcus aureus strain USA300-SUR1]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8NW77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0145657