Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC14_RS13405 | Genome accession | NZ_CP011406 |
| Coordinates | 2894542..2895006 (+) | Length | 154 a.a. |
| NCBI ID | WP_025524817.1 | Uniprot ID | A0A7Z2MTQ1 |
| Organism | Vibrio parahaemolyticus strain FORC_014 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2889542..2900006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC14_RS13390 (FORC14_2640) | pdhR | 2891574..2892341 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FORC14_RS13395 (FORC14_2641) | ampD | 2892747..2893298 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC14_RS13400 (FORC14_2642) | nadC | 2893391..2894278 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC14_RS13405 (FORC14_2643) | pilA | 2894542..2895006 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| FORC14_RS13410 (FORC14_2644) | pilB | 2895013..2896698 (+) | 1686 | WP_063517849.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC14_RS13415 (FORC14_2645) | pilC | 2896722..2897945 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| FORC14_RS13420 (FORC14_2646) | pilD | 2898010..2898879 (+) | 870 | WP_029823255.1 | prepilin peptidase | Machinery gene |
| FORC14_RS13425 (FORC14_2647) | coaE | 2898880..2899494 (+) | 615 | WP_063517757.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16144.59 Da Isoelectric Point: 8.1135
>NTDB_id=145641 FORC14_RS13405 WP_025524817.1 2894542..2895006(+) (pilA) [Vibrio parahaemolyticus strain FORC_014]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
Nucleotide
Download Length: 465 bp
>NTDB_id=145641 FORC14_RS13405 WP_025524817.1 2894542..2895006(+) (pilA) [Vibrio parahaemolyticus strain FORC_014]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.71 |
100 |
0.591 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.865 |
96.104 |
0.383 |
| pilA | Haemophilus influenzae 86-028NP |
41.429 |
90.909 |
0.377 |