Detailed information NTG0145644

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC14_RS13420
• Genome accession: NZ_CP011406
• Coordinates: 2898010..2898879 (+)
• Length: 289 a.a.
• NCBI ID: WP_029823255.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_014
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2893010..2903879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC14_RS13400 (FORC14_2642)	nadC	2893391..2894278 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FORC14_RS13405 (FORC14_2643)	pilA	2894542..2895006 (+)	465	WP_025524817.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
FORC14_RS13410 (FORC14_2644)	pilB	2895013..2896698 (+)	1686	WP_063517849.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC14_RS13415 (FORC14_2645)	pilC	2896722..2897945 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
FORC14_RS13420 (FORC14_2646)	pilD	2898010..2898879 (+)	870	WP_029823255.1	prepilin peptidase	Machinery gene
FORC14_RS13425 (FORC14_2647)	coaE	2898880..2899494 (+)	615	WP_063517757.1	dephospho-CoA kinase	-
FORC14_RS13430 (FORC14_2648)	zapD	2899522..2900262 (+)	741	WP_025524825.1	cell division protein ZapD	-
FORC14_RS13435 (FORC14_2649)	yacG	2900331..2900525 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FORC14_RS13440 (FORC14_2650)	rplS	2900941..2901294 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
FORC14_RS13445 (FORC14_2651)	trmD	2901336..2902079 (-)	744	WP_063517758.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC14_RS13450 (FORC14_2652)	rimM	2902107..2902655 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC14_RS13455 (FORC14_2653)	rpsP	2902684..2902932 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32445.55 Da
• Isoelectric Point: 7.1971

>NTDB_id=145644 FORC14_RS13420 WP_029823255.1 2898010..2898879(+) (pilD) [Vibrio parahaemolyticus strain FORC_014]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTTISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIATTFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=145644 FORC14_RS13420 WP_029823255.1 2898010..2898879(+) (pilD) [Vibrio parahaemolyticus strain FORC_014]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCACAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCACGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGGGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.235	100	0.882
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453