Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TVD_RS02500 Genome accession   NZ_CP011367
Coordinates   519506..519991 (+) Length   161 a.a.
NCBI ID   WP_018146435.1    Uniprot ID   -
Organism   Thioalkalivibrio versutus strain D301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 514506..524991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TVD_RS02490 (TVD_02490) uvrA 514962..517814 (-) 2853 WP_018176984.1 excinuclease ABC subunit UvrA -
  TVD_RS02495 (TVD_02495) - 518007..519377 (+) 1371 WP_047250720.1 MFS transporter -
  TVD_RS02500 (TVD_02500) ssb 519506..519991 (+) 486 WP_018146435.1 single-stranded DNA-binding protein Machinery gene
  TVD_RS02505 (TVD_02505) miaB 520037..521389 (+) 1353 WP_047250721.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  TVD_RS02510 (TVD_02510) - 521402..522415 (+) 1014 WP_047250722.1 PhoH family protein -
  TVD_RS02515 (TVD_02515) ybeY 522405..522920 (+) 516 WP_018952077.1 rRNA maturation RNase YbeY -
  TVD_RS02520 (TVD_02520) - 522913..523845 (+) 933 WP_018176983.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 16998.47 Da        Isoelectric Point: 4.9562

>NTDB_id=145155 TVD_RS02500 WP_018146435.1 519506..519991(+) (ssb) [Thioalkalivibrio versutus strain D301]
MARGVNKVILLGNLGADPEKRETPNGVTVTNLRLATSEQWTDKNSGEKRENTEWHRVVMFGRLADIAAQYLSKGSQVYVE
GKIQTRKWQDQSGNDRYSTEVVANEMQLIGGRGGSGGGGGGFDQDPGYGGGNAYGGGGQQGGNRSNAPASGGGFDDDDVP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=145155 TVD_RS02500 WP_018146435.1 519506..519991(+) (ssb) [Thioalkalivibrio versutus strain D301]
ATGGCCCGCGGCGTCAACAAAGTCATCCTGCTCGGCAACCTCGGGGCTGACCCGGAAAAGCGCGAGACCCCGAACGGGGT
TACCGTCACCAATCTGCGTCTGGCGACGTCGGAGCAGTGGACCGACAAGAACTCCGGCGAGAAGCGCGAAAACACCGAAT
GGCACCGGGTGGTGATGTTCGGGCGCCTGGCGGATATCGCCGCGCAGTACCTGTCCAAGGGCTCGCAGGTCTATGTCGAA
GGCAAGATCCAGACCCGCAAATGGCAGGACCAATCCGGTAATGATCGTTACAGCACCGAGGTCGTGGCCAACGAGATGCA
GCTGATCGGCGGTCGCGGTGGCAGTGGCGGCGGTGGTGGCGGTTTCGACCAGGACCCGGGTTATGGCGGCGGCAATGCCT
ACGGCGGCGGTGGCCAGCAAGGCGGCAACCGCAGCAACGCGCCGGCCTCCGGCGGCGGCTTCGATGACGACGACGTCCCG
TTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.286

100

0.547
  ssb Glaesserella parasuis strain SC1401

48.045

100

0.534
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.484
  ssb Neisseria meningitidis MC58

43.503

100

0.478

Multiple sequence alignment