Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAV35_RS00150 Genome accession   NZ_CP011361
Coordinates   27429..27911 (+) Length   160 a.a.
NCBI ID   WP_008590337.1    Uniprot ID   -
Organism   Salimicrobium jeotgali strain MJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 22429..32911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV35_RS00120 (AAV35_000120) - 22932..23768 (+) 837 WP_008590325.1 ParB/RepB/Spo0J family partition protein -
  AAV35_RS00125 (AAV35_000125) - 23858..24562 (+) 705 WP_008590327.1 DUF554 domain-containing protein -
  AAV35_RS00130 (AAV35_000130) - 24724..25569 (+) 846 WP_237757032.1 mechanosensitive ion channel family protein -
  AAV35_RS00135 (AAV35_000135) - 25553..25747 (+) 195 WP_008590330.1 DUF951 domain-containing protein -
  AAV35_RS00140 (AAV35_000140) ychF 25908..27005 (+) 1098 WP_008590332.1 redox-regulated ATPase YchF -
  AAV35_RS00145 (AAV35_000145) rpsF 27126..27416 (+) 291 WP_008590335.1 30S ribosomal protein S6 -
  AAV35_RS00150 (AAV35_000150) ssbA 27429..27911 (+) 483 WP_008590337.1 single-stranded DNA-binding protein Machinery gene
  AAV35_RS00155 (AAV35_000155) rpsR 27959..28183 (+) 225 WP_008590340.1 30S ribosomal protein S18 -
  AAV35_RS00160 - 28288..28587 (+) 300 WP_073991971.1 TIGR04104 family putative zinc finger protein -
  AAV35_RS00165 (AAV35_000160) - 28689..29216 (+) 528 WP_008590341.1 YceI family protein -
  AAV35_RS00170 (AAV35_000165) - 29270..29905 (-) 636 WP_008590343.1 membrane protein -
  AAV35_RS00175 (AAV35_000170) - 30040..31716 (-) 1677 WP_008590344.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17440.93 Da        Isoelectric Point: 4.4707

>NTDB_id=145052 AAV35_RS00150 WP_008590337.1 27429..27911(+) (ssbA) [Salimicrobium jeotgali strain MJ3]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNNQGNNDADFINCVVWRRAAENLANFMSKGSQVGVDGRLQTR
SFDNKEGRRVFVTEVVADSVQFLESKGSSGGGQSSRSDQSSGYQGNQNQPSQGNYGQSKNDDPFADDGEPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=145052 AAV35_RS00150 WP_008590337.1 27429..27911(+) (ssbA) [Salimicrobium jeotgali strain MJ3]
ATGTTGAATCGTGTCGTTTTAGTCGGCAGGTTAACGAAGGATCCTGATTTGCGCTATACACCGAATGGTGTAGCTGTCGC
TAATTTCACCATCGCTGTAAATCGTCCGTTTTCCAACAACCAGGGAAACAACGATGCAGATTTCATTAACTGCGTCGTAT
GGAGAAGAGCAGCGGAAAACCTGGCGAACTTTATGAGTAAAGGCAGTCAGGTCGGTGTAGACGGACGGTTGCAGACCCGG
AGCTTCGATAACAAAGAAGGTCGTCGTGTGTTTGTTACGGAAGTCGTAGCCGACAGCGTCCAGTTTCTGGAATCAAAAGG
CAGTTCCGGCGGCGGACAAAGTTCCCGCAGCGATCAGTCTTCAGGATACCAGGGCAATCAGAACCAACCATCACAAGGTA
ATTACGGACAGTCAAAAAATGATGACCCGTTCGCAGATGACGGGGAACCTATTGACATATCGGATGATGATCTACCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.006

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

66.25

0.4
  ssb Glaesserella parasuis strain SC1401

33.708

100

0.375

Multiple sequence alignment