Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AXF35_RS08025 Genome accession   NZ_CP014255
Coordinates   1731899..1732909 (-) Length   336 a.a.
NCBI ID   WP_027221764.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726899..1737909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS07995 (AXF35_08830) - 1727238..1728071 (-) 834 WP_027221758.1 S1/P1 nuclease -
  AXF35_RS08000 (AXF35_08825) tolB 1728074..1729333 (-) 1260 WP_027221759.1 Tol-Pal system beta propeller repeat protein TolB -
  AXF35_RS08005 (AXF35_08820) tolA 1729339..1730337 (-) 999 WP_027221760.1 cell envelope integrity protein TolA -
  AXF35_RS08010 (AXF35_08815) tolR 1730334..1730789 (-) 456 WP_027221761.1 protein TolR -
  AXF35_RS08015 (AXF35_08810) tolQ 1730798..1731475 (-) 678 WP_080272960.1 protein TolQ -
  AXF35_RS08020 (AXF35_08805) ybgC 1731500..1731895 (-) 396 WP_027221763.1 tol-pal system-associated acyl-CoA thioesterase -
  AXF35_RS08025 (AXF35_08800) ruvB 1731899..1732909 (-) 1011 WP_027221764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AXF35_RS08030 (AXF35_08795) - 1733033..1733596 (-) 564 WP_027221765.1 sigma-70 family RNA polymerase sigma factor -
  AXF35_RS08035 (AXF35_08790) - 1733696..1734115 (-) 420 WP_269456675.1 hypothetical protein -
  AXF35_RS08040 (AXF35_08785) - 1734081..1734320 (-) 240 WP_027221767.1 succinate dehydrogenase assembly factor 2 -
  AXF35_RS08045 (AXF35_08780) - 1734447..1735436 (+) 990 WP_027221768.1 YgfZ/GcvT domain-containing protein -
  AXF35_RS08050 (AXF35_08775) - 1735468..1736016 (-) 549 WP_027221769.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37117.65 Da        Isoelectric Point: 5.4546

>NTDB_id=144879 AXF35_RS08025 WP_027221764.1 1731899..1732909(-) (ruvB) [Legionella pneumophila subsp. pascullei strain F-4185]
MLESDRLISSQSIVSEEAIDRAIRPLSLSEYVGQDSVSSQMQIFINAAKKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTRIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTSRGRIA
TSKAYQHFGFNAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=144879 AXF35_RS08025 WP_027221764.1 1731899..1732909(-) (ruvB) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGCTCGAAAGTGATCGCCTAATCAGTAGTCAAAGTATTGTCTCAGAAGAAGCCATAGATAGAGCTATCAGGCCGCTTAG
TTTGAGTGAGTACGTAGGACAAGATTCTGTAAGTTCACAGATGCAGATATTTATCAATGCGGCAAAAAAGCGAAACGATC
CTTTAGACCATGTTCTTATTTTTGGCCCACCTGGTCTTGGCAAAACTACTTTAGCGAATATCATAGCTCACGAAATGGGA
GTTAATATCAGACAAACTTCTGGGCCAGTGATTGAGCGCGCAGGTGACATTGCTGCTATATTGACGAATTTACAACAAAA
TGATGTACTATTTATTGACGAAATTCATAGACTAAGTCCTGTTATAGAAGAAATTCTTTATCCGGCTATGGAAGATTATA
AGTTGGATATCATGATAGGAGAAGGGCCGGCAGCACGATCTATTAAATTGGAGTTACCTCCTTTTACATTGATTGGAGCT
ACAACAAGAGCAGGATTACTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGATTGGAGTATTACTCTGTTGA
TTCGCTTACCCGGATTGTAGCTCGCTCTGCGCATTTGCTTGGTGTCCCTACAAAACCGGAAGGAGCCAGAGAAATTGCAT
TACGTTCAAGAGGAACACCACGCATTGCTAATCGCCTGTTAAGAAGAGTAAGAGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCTTTGGAAATGCTTGAAGTTGATCAACATGGATTTGATTTAATGGATAGAAA
ATTATTGTTAGCAGTGATAGAGCATTTCAACGGTGGTCCAGTAGGCATAGATAGCATTGCAGCTGCTATTGGCGAAGAGA
AAGGAACTATTGAGGATGTTTTGGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTTCTCGCGGTAGAATAGCC
ACTTCGAAAGCATATCAGCATTTTGGTTTTAACGCGATCGAGCAGGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.671

97.619

0.592
  ruvB Streptococcus pneumoniae TIGR4

57.273

98.214

0.563
  ruvB Streptococcus pneumoniae R6

57.273

98.214

0.563
  ruvB Streptococcus pneumoniae D39

57.273

98.214

0.563
  ruvB Helicobacter pylori 26695

53.106

95.833

0.509
  ruvB Synechocystis sp. PCC 6803

53.333

93.75

0.5