Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAV29_RS12505 Genome accession   NZ_CP011346
Coordinates   2601045..2601380 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ-D34     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596045..2606380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS12485 (AAV29_12485) gcvT 2596656..2597756 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  AAV29_RS12490 (AAV29_12490) - 2598179..2599849 (+) 1671 WP_046559872.1 DEAD/DEAH box helicase -
  AAV29_RS12495 (AAV29_12495) - 2599867..2600661 (+) 795 WP_014305407.1 YqhG family protein -
  AAV29_RS12500 (AAV29_12500) sinI 2600838..2601011 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AAV29_RS12505 (AAV29_12505) sinR 2601045..2601380 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AAV29_RS12510 (AAV29_12510) tasA 2601428..2602213 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  AAV29_RS12515 (AAV29_12515) sipW 2602277..2602861 (-) 585 WP_046559873.1 signal peptidase I SipW -
  AAV29_RS12520 (AAV29_12520) tapA 2602833..2603504 (-) 672 WP_046559874.1 amyloid fiber anchoring/assembly protein TapA -
  AAV29_RS12525 (AAV29_12525) - 2603763..2604092 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  AAV29_RS12530 (AAV29_12530) - 2604132..2604311 (-) 180 WP_003153093.1 YqzE family protein -
  AAV29_RS12535 (AAV29_12535) comGG 2604368..2604745 (-) 378 WP_046559875.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAV29_RS12540 (AAV29_12540) comGF 2604746..2605141 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  AAV29_RS12545 (AAV29_12545) comGE 2605155..2605469 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAV29_RS12550 (AAV29_12550) comGD 2605453..2605890 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAV29_RS12555 (AAV29_12555) comGC 2605880..2606146 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=144861 AAV29_RS12505 WP_003153104.1 2601045..2601380(+) (sinR) [Bacillus velezensis strain JJ-D34]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=144861 AAV29_RS12505 WP_003153104.1 2601045..2601380(+) (sinR) [Bacillus velezensis strain JJ-D34]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment