Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AAV29_RS12555 | Genome accession | NZ_CP011346 |
| Coordinates | 2605880..2606146 (-) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JJ-D34 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2600880..2611146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAV29_RS12505 (AAV29_12505) | sinR | 2601045..2601380 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| AAV29_RS12510 (AAV29_12510) | tasA | 2601428..2602213 (-) | 786 | WP_003153102.1 | biofilm matrix protein TasA | - |
| AAV29_RS12515 (AAV29_12515) | sipW | 2602277..2602861 (-) | 585 | WP_046559873.1 | signal peptidase I SipW | - |
| AAV29_RS12520 (AAV29_12520) | tapA | 2602833..2603504 (-) | 672 | WP_046559874.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAV29_RS12525 (AAV29_12525) | - | 2603763..2604092 (+) | 330 | WP_003153097.1 | DUF3889 domain-containing protein | - |
| AAV29_RS12530 (AAV29_12530) | - | 2604132..2604311 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| AAV29_RS12535 (AAV29_12535) | comGG | 2604368..2604745 (-) | 378 | WP_046559875.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AAV29_RS12540 (AAV29_12540) | comGF | 2604746..2605141 (-) | 396 | WP_046559876.1 | competence type IV pilus minor pilin ComGF | - |
| AAV29_RS12545 (AAV29_12545) | comGE | 2605155..2605469 (-) | 315 | WP_015388003.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AAV29_RS12550 (AAV29_12550) | comGD | 2605453..2605890 (-) | 438 | WP_044053464.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AAV29_RS12555 (AAV29_12555) | comGC | 2605880..2606146 (-) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AAV29_RS12560 (AAV29_12560) | comGB | 2606193..2607230 (-) | 1038 | WP_014305414.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AAV29_RS12565 (AAV29_12565) | comGA | 2607217..2608287 (-) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AAV29_RS12570 (AAV29_12570) | - | 2608479..2609429 (-) | 951 | WP_003153082.1 | magnesium transporter CorA family protein | - |
| AAV29_RS12575 (AAV29_12575) | - | 2609575..2610876 (+) | 1302 | WP_014305416.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=144865 AAV29_RS12555 WP_042635730.1 2605880..2606146(-) (comGC) [Bacillus velezensis strain JJ-D34]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=144865 AAV29_RS12555 WP_042635730.1 2605880..2606146(-) (comGC) [Bacillus velezensis strain JJ-D34]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACTATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGCAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACTATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGCAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |