Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAV53_RS13695 Genome accession   NZ_CP011345
Coordinates   2726078..2726560 (-) Length   160 a.a.
NCBI ID   WP_003733722.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FW040025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2721078..2731560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV53_RS13660 (AAV53_13680) - 2721979..2723310 (-) 1332 WP_064034186.1 PBSX family phage terminase large subunit -
  AAV53_RS13665 (AAV53_13685) - 2723279..2723821 (-) 543 WP_064034187.1 terminase small subunit -
  AAV53_RS13670 (AAV53_13690) - 2723863..2724162 (-) 300 WP_061112097.1 hypothetical protein -
  AAV53_RS13675 (AAV53_13695) - 2724283..2724855 (-) 573 WP_064034188.1 sigma-70 family RNA polymerase sigma factor -
  AAV53_RS15655 - 2724945..2725100 (-) 156 WP_003734997.1 hypothetical protein -
  AAV53_RS13680 (AAV53_13700) - 2725141..2725485 (-) 345 Protein_2691 DUF2481 family protein -
  AAV53_RS13685 (AAV53_13705) - 2725528..2725932 (-) 405 WP_046421603.1 DUF1064 domain-containing protein -
  AAV53_RS13690 (AAV53_13710) - 2725877..2726059 (-) 183 WP_031669404.1 hypothetical protein -
  AAV53_RS13695 (AAV53_13715) ssbA 2726078..2726560 (-) 483 WP_003733722.1 single-stranded DNA-binding protein Machinery gene
  AAV53_RS13700 (AAV53_13720) - 2726561..2726815 (-) 255 WP_003733723.1 hypothetical protein -
  AAV53_RS13710 (AAV53_13730) - 2727018..2727290 (-) 273 WP_003731705.1 hypothetical protein -
  AAV53_RS13715 (AAV53_13735) - 2727287..2727616 (-) 330 WP_003731704.1 hypothetical protein -
  AAV53_RS13720 (AAV53_13740) - 2727617..2727826 (-) 210 WP_014601509.1 hypothetical protein -
  AAV53_RS13725 (AAV53_13745) - 2727823..2728224 (-) 402 WP_064034189.1 hypothetical protein -
  AAV53_RS15710 - 2728302..2728448 (-) 147 WP_014929526.1 hypothetical protein -
  AAV53_RS13730 (AAV53_13750) - 2728445..2729005 (-) 561 WP_061107198.1 DUF1642 domain-containing protein -
  AAV53_RS13735 (AAV53_13755) - 2729002..2729466 (-) 465 WP_077950506.1 class I SAM-dependent methyltransferase -
  AAV53_RS13740 (AAV53_13760) - 2729463..2730386 (-) 924 WP_064034190.1 DnaD domain-containing protein -
  AAV53_RS13745 (AAV53_13765) - 2730400..2731038 (-) 639 WP_003769987.1 ERF family protein -
  AAV53_RS13750 (AAV53_13770) - 2731043..2731519 (-) 477 WP_009930471.1 siphovirus Gp157 family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17656.46 Da        Isoelectric Point: 4.9725

>NTDB_id=144815 AAV53_RS13695 WP_003733722.1 2726078..2726560(-) (ssbA) [Listeria monocytogenes strain FW040025]
MMNRVILVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPKLNAVEGSTPNNNQNEANYSNNNKNGSYRASSSQNSDSFANEGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=144815 AAV53_RS13695 WP_003733722.1 2726078..2726560(-) (ssbA) [Listeria monocytogenes strain FW040025]
ATGATGAATCGTGTCATACTAGTAGGACGCTTAACTAAAGACCCTGATTTACGTTATACCCCAGCTGGTGCAGCAGTTGC
GACTTTTACACTTGCTGTAAATCGTACTTTCACTAACCAACAAGGAGAACGAGAAGCTGATTTTATTAATTGTGTAGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCTTGAAAAAAGGAAGTATGGCAGGCGTTGACGGTCGCGTTCAAACTCGT
AACTATGAGGGGAACGACGGTAAGCGCGTTTATGTGACGGAAATAGTGGCCGAGAGTGTTCAATTTTTGGAACCTAAGCT
GAACGCTGTAGAAGGCTCTACACCGAATAATAATCAAAACGAAGCTAATTATTCAAATAACAATAAAAACGGCTCATATC
GAGCTAGTTCGAGCCAGAATAGTGATTCATTTGCAAACGAAGGCAAGCCGATTGATATTTCAGATGACGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.279

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

66.25

0.425
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.369

Multiple sequence alignment