Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VL20_RS13205 Genome accession   NZ_CP011339
Coordinates   2754648..2755013 (+) Length   121 a.a.
NCBI ID   WP_002785387.1    Uniprot ID   I4H489
Organism   Microcystis panniformis FACHB-1757     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2749648..2760013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VL20_RS13190 (VL20_3209) - 2750998..2752185 (+) 1188 WP_052276769.1 RNA-guided endonuclease TnpB family protein -
  VL20_RS13195 (VL20_3210) - 2752567..2752848 (+) 282 WP_052276770.1 hypothetical protein -
  VL20_RS28620 - 2753583..2754231 (+) 649 Protein_2767 RNA-guided endonuclease InsQ/TnpB family protein -
  VL20_RS13205 (VL20_3214) pilH 2754648..2755013 (+) 366 WP_002785387.1 PleD family two-component system response regulator Machinery gene
  VL20_RS13210 (VL20_3215) - 2755105..2755635 (+) 531 WP_002757615.1 chemotaxis protein CheW -
  VL20_RS13215 (VL20_3216) pilJ 2755725..2758358 (+) 2634 WP_052276771.1 methyl-accepting chemotaxis protein Machinery gene
  VL20_RS13220 (VL20_3217) - 2758432..2759643 (+) 1212 WP_052276772.1 glycosyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13907.35 Da        Isoelectric Point: 6.9277

>NTDB_id=144707 VL20_RS13205 WP_002785387.1 2754648..2755013(+) (pilH) [Microcystis panniformis FACHB-1757]
MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVLLDIVMPRMNGYEVCRRLKSDPKTKNVPVVI
CSLKGEVFDRYWAMKIGADAYIVKPFEPIEFIYTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=144707 VL20_RS13205 WP_002785387.1 2754648..2755013(+) (pilH) [Microcystis panniformis FACHB-1757]
ATGAGCGAAATCTTGCTGGTAGAAGACAGCCAAACGCAACGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATCAA
GGTCACGATCGCCACGGATGGGGTAGAAGCCCTCGAACATATTCAGAGAGCCAATCCCGATCTCGTCCTCCTCGATATCG
TCATGCCCCGCATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCAAAAATGTCCCGGTGGTCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGCCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
ACCGATTGAGTTCATTTATACCATTAAACAACTGTTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4H489

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70

99.174

0.694
  vicR Streptococcus mutans UA159

36.364

100

0.364
  pilG Acinetobacter baumannii strain A118

38.261

95.041

0.364

Multiple sequence alignment