Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AWB63_RS10205 Genome accession   NZ_CP014144
Coordinates   2180453..2181043 (+) Length   196 a.a.
NCBI ID   WP_002886323.1    Uniprot ID   -
Organism   Streptococcus salivarius strain JF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175453..2186043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB63_RS10180 (AWB63_10180) - 2176578..2177033 (-) 456 WP_002886315.1 DUF3021 domain-containing protein -
  AWB63_RS10185 (AWB63_10185) - 2177030..2177467 (-) 438 WP_038675015.1 LytTR family DNA-binding domain-containing protein -
  AWB63_RS10190 (AWB63_10190) - 2177646..2177948 (+) 303 WP_038675017.1 hypothetical protein -
  AWB63_RS10195 (AWB63_10195) hexB 2178001..2179944 (+) 1944 WP_038675019.1 DNA mismatch repair endonuclease MutL Machinery gene
  AWB63_RS10200 (AWB63_10200) - 2180075..2180296 (+) 222 WP_038675022.1 hypothetical protein -
  AWB63_RS10205 (AWB63_10205) ruvA 2180453..2181043 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA Machinery gene
  AWB63_RS10210 (AWB63_10210) - 2181052..2181606 (+) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  AWB63_RS10215 (AWB63_10215) cinA 2181703..2182971 (+) 1269 WP_014633777.1 competence/damage-inducible protein A Machinery gene
  AWB63_RS10220 (AWB63_10220) recA 2183007..2184146 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  AWB63_RS10225 (AWB63_10225) spx 2184314..2184712 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21728.12 Da        Isoelectric Point: 5.6710

>NTDB_id=144476 AWB63_RS10205 WP_002886323.1 2180453..2181043(+) (ruvA) [Streptococcus salivarius strain JF]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALI
ALGYKATELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=144476 AWB63_RS10205 WP_002886323.1 2180453..2181043(+) (ruvA) [Streptococcus salivarius strain JF]
ATGTATGATTATATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTGGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAGCAAATGGTTTTGGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGATT
GCTCTTGGTTATAAAGCCACAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423