Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   YQ44_RS27725 Genome accession   NZ_CP011319
Coordinates   6393472..6393981 (+) Length   169 a.a.
NCBI ID   WP_034781209.1    Uniprot ID   -
Organism   Janthinobacterium sp. 1_2014MBL_MicDiv     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6388472..6398981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YQ44_RS27720 (YQ44_27745) uvrA 6390242..6393091 (-) 2850 WP_071326109.1 excinuclease ABC subunit UvrA -
  YQ44_RS27725 (YQ44_27750) ssb 6393472..6393981 (+) 510 WP_034781209.1 single-stranded DNA-binding protein Machinery gene
  YQ44_RS29425 - 6394005..6394253 (-) 249 WP_198043845.1 hypothetical protein -
  YQ44_RS27730 (YQ44_27755) - 6394252..6394641 (+) 390 WP_198043846.1 DUF1203 domain-containing protein -
  YQ44_RS27735 (YQ44_27760) - 6394674..6395090 (-) 417 WP_071326111.1 hypothetical protein -
  YQ44_RS27740 (YQ44_27765) - 6395400..6396179 (+) 780 WP_071326112.1 acetoin reductase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18092.27 Da        Isoelectric Point: 5.9466

>NTDB_id=144470 YQ44_RS27725 WP_034781209.1 6393472..6393981(+) (ssb) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=144470 YQ44_RS27725 WP_034781209.1 6393472..6393981(+) (ssb) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATTTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGT
CGCTTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGTCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGCGGTGGCGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCGCCAGCCCCACGTCCAGCTCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCACCGAACTTC
TCGGACATGGATGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.273

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.544
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.544
  ssb Vibrio cholerae strain A1552

50.838

100

0.538

Multiple sequence alignment