Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AWB63_RS09675 | Genome accession | NZ_CP014144 |
| Coordinates | 2101761..2102762 (+) | Length | 333 a.a. |
| NCBI ID | WP_002887068.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain JF | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2096761..2107762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWB63_RS09655 (AWB63_09655) | - | 2097451..2098743 (+) | 1293 | WP_037601293.1 | adenylosuccinate synthase | - |
| AWB63_RS09660 (AWB63_09660) | - | 2099019..2099453 (+) | 435 | WP_022496078.1 | low molecular weight protein-tyrosine-phosphatase | - |
| AWB63_RS09665 (AWB63_09665) | - | 2099450..2099860 (+) | 411 | WP_002885750.1 | membrane protein | - |
| AWB63_RS09670 (AWB63_09670) | - | 2099857..2101680 (+) | 1824 | WP_038676887.1 | acyltransferase family protein | - |
| AWB63_RS09675 (AWB63_09675) | ruvB | 2101761..2102762 (+) | 1002 | WP_002887068.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AWB63_RS09680 (AWB63_09680) | rpsJ | 2103007..2103315 (+) | 309 | WP_002885653.1 | 30S ribosomal protein S10 | - |
| AWB63_RS09685 (AWB63_09685) | rplC | 2103430..2104056 (+) | 627 | WP_002885755.1 | 50S ribosomal protein L3 | - |
| AWB63_RS09690 (AWB63_09690) | rplD | 2104081..2104704 (+) | 624 | WP_002885795.1 | 50S ribosomal protein L4 | - |
| AWB63_RS09695 (AWB63_09695) | - | 2104704..2105000 (+) | 297 | WP_002885771.1 | 50S ribosomal protein L23 | - |
| AWB63_RS09700 (AWB63_09700) | rplB | 2105018..2105851 (+) | 834 | WP_002885867.1 | 50S ribosomal protein L2 | - |
| AWB63_RS09705 (AWB63_09705) | rpsS | 2105945..2106222 (+) | 278 | Protein_1902 | 30S ribosomal protein S19 | - |
| AWB63_RS09710 (AWB63_09710) | rplV | 2106238..2106582 (+) | 345 | WP_002887063.1 | 50S ribosomal protein L22 | - |
| AWB63_RS09715 (AWB63_09715) | rpsC | 2106595..2107248 (+) | 654 | WP_002885727.1 | 30S ribosomal protein S3 | - |
| AWB63_RS09720 (AWB63_09720) | rplP | 2107252..2107665 (+) | 414 | WP_000960950.1 | 50S ribosomal protein L16 | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37583.09 Da Isoelectric Point: 4.5040
>NTDB_id=144470 AWB63_RS09675 WP_002887068.1 2101761..2102762(+) (ruvB) [Streptococcus salivarius strain JF]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES
Nucleotide
Download Length: 1002 bp
>NTDB_id=144470 AWB63_RS09675 WP_002887068.1 2101761..2102762(+) (ruvB) [Streptococcus salivarius strain JF]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATACATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCTATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGCGAAACAAGTCGTAGTGTCCATCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACTCGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGCTTTGGGATTAATGGTCATATGGAATATTATGAGCTACCAGATTTGAA
GGAAATTATTGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACCCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCAGAAGAGCGAGAAACGG
TAGAAGATATGTACGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATACATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCTATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGCGAAACAAGTCGTAGTGTCCATCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACTCGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGCTTTGGGATTAATGGTCATATGGAATATTATGAGCTACCAGATTTGAA
GGAAATTATTGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACCCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCAGAAGAGCGAGAAACGG
TAGAAGATATGTACGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
86.747 |
99.7 |
0.865 |
| ruvB | Streptococcus pneumoniae R6 |
86.446 |
99.7 |
0.862 |
| ruvB | Streptococcus pneumoniae D39 |
86.446 |
99.7 |
0.862 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
58.204 |
96.997 |
0.565 |
| ruvB | Synechocystis sp. PCC 6803 |
51.118 |
93.994 |
0.48 |
| ruvB | Helicobacter pylori 26695 |
49.844 |
96.396 |
0.48 |