Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | myaer_RS16400 | Genome accession | NZ_CP011304 |
| Coordinates | 3332797..3333162 (+) | Length | 121 a.a. |
| NCBI ID | WP_046662875.1 | Uniprot ID | A0A0F6U5Z1 |
| Organism | Microcystis aeruginosa NIES-2549 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3327797..3338162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| myaer_RS16380 (MYAER_3368) | - | 3328117..3328926 (-) | 810 | WP_046662872.1 | squalene/phytoene synthase family protein | - |
| myaer_RS16385 (MYAER_3369) | - | 3329196..3329420 (-) | 225 | WP_046662873.1 | hypothetical protein | - |
| myaer_RS22365 (MYAER_3370) | - | 3329547..3329675 (-) | 129 | WP_255420520.1 | hypothetical protein | - |
| myaer_RS16390 (MYAER_3371) | hmpF | 3329805..3331445 (-) | 1641 | WP_046662874.1 | pilus motility taxis protein HmpF | - |
| myaer_RS22725 (MYAER_3373) | - | 3332113..3332196 (+) | 84 | Protein_3146 | DUF4388 domain-containing protein | - |
| myaer_RS21455 (MYAER_3374) | - | 3332291..3332440 (+) | 150 | WP_162496091.1 | response regulator | - |
| myaer_RS16400 (MYAER_3376) | pilH | 3332797..3333162 (+) | 366 | WP_046662875.1 | response regulator transcription factor | Machinery gene |
| myaer_RS16405 (MYAER_3377) | - | 3333345..3334568 (+) | 1224 | WP_046662876.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| myaer_RS16410 (MYAER_3378) | - | 3334614..3335144 (+) | 531 | WP_046662877.1 | chemotaxis protein CheW | - |
| myaer_RS16415 (MYAER_3379) | pilJ | 3335238..3337901 (+) | 2664 | WP_046662878.1 | HAMP domain-containing methyl-accepting chemotaxis protein | Machinery gene |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13909.46 Da Isoelectric Point: 8.1163
>NTDB_id=144355 myaer_RS16400 WP_046662875.1 3332797..3333162(+) (pilH) [Microcystis aeruginosa NIES-2549]
MREILLVEDSQAQRELICDLLRNSGIKVTIAKDGVEALEHIQRVNPDLVVLDIVMPRINGYEVCRRLKSDPKTKNIPVII
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFICTVKQLLRR
MREILLVEDSQAQRELICDLLRNSGIKVTIAKDGVEALEHIQRVNPDLVVLDIVMPRINGYEVCRRLKSDPKTKNIPVII
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFICTVKQLLRR
Nucleotide
Download Length: 366 bp
>NTDB_id=144355 myaer_RS16400 WP_046662875.1 3332797..3333162(+) (pilH) [Microcystis aeruginosa NIES-2549]
ATGAGAGAAATATTGCTGGTAGAAGACAGCCAAGCGCAACGGGAACTGATCTGTGATCTGCTCCGCAATAGCGGCATTAA
GGTCACGATCGCCAAAGATGGGGTGGAGGCCCTCGAACATATTCAGAGAGTCAATCCCGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATCAATGGTTATGAGGTATGTCGTCGTCTCAAGTCGGATCCCAAAACCAAAAATATCCCCGTGATCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAACCCTTTGA
ACCGATTGAGTTCATTTGCACTGTTAAACAACTGCTGCGCCGATAA
ATGAGAGAAATATTGCTGGTAGAAGACAGCCAAGCGCAACGGGAACTGATCTGTGATCTGCTCCGCAATAGCGGCATTAA
GGTCACGATCGCCAAAGATGGGGTGGAGGCCCTCGAACATATTCAGAGAGTCAATCCCGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATCAATGGTTATGAGGTATGTCGTCGTCTCAAGTCGGATCCCAAAACCAAAAATATCCCCGTGATCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAACCCTTTGA
ACCGATTGAGTTCATTTGCACTGTTAAACAACTGCTGCGCCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
70 |
99.174 |
0.694 |
| vicR | Streptococcus mutans UA159 |
38.017 |
100 |
0.38 |
| micA | Streptococcus pneumoniae Cp1015 |
37.19 |
100 |
0.372 |
| pilG | Acinetobacter baumannii strain A118 |
38.261 |
95.041 |
0.364 |