Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AL502_RS07130 Genome accession   NZ_CP014111
Coordinates   1178283..1179293 (-) Length   336 a.a.
NCBI ID   WP_000568517.1    Uniprot ID   A0A7Z8DY11
Organism   Escherichia coli strain FDAARGOS_144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1173283..1184293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL502_RS07110 (AL502_07610) mepM 1174252..1175574 (-) 1323 WP_001184045.1 murein DD-endopeptidase MepM -
  AL502_RS07115 (AL502_07615) znuA 1175590..1176522 (-) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  AL502_RS07120 (AL502_07620) znuC 1176601..1177356 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  AL502_RS07125 (AL502_07625) znuB 1177353..1178138 (+) 786 WP_000571471.1 zinc ABC transporter permease subunit ZnuB -
  AL502_RS07130 (AL502_07630) ruvB 1178283..1179293 (-) 1011 WP_000568517.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AL502_RS07135 (AL502_07635) ruvA 1179302..1179913 (-) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  AL502_RS07140 (AL502_07640) yobI 1180052..1180117 (-) 66 WP_072093883.1 stress response small protein YobI -
  AL502_RS07145 (AL502_07645) yebB 1180188..1180790 (+) 603 WP_001024919.1 YebB family permuted papain-like enzyme -
  AL502_RS07150 (AL502_07650) ruvC 1180792..1181313 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  AL502_RS07155 (AL502_07655) yebC 1181348..1182088 (-) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AL502_RS07160 (AL502_07660) nudB 1182117..1182569 (-) 453 WP_077249130.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37143.74 Da        Isoelectric Point: 4.7818

>NTDB_id=144295 AL502_RS07130 WP_000568517.1 1178283..1179293(-) (ruvB) [Escherichia coli strain FDAARGOS_144]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TARAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=144295 AL502_RS07130 WP_000568517.1 1178283..1179293(-) (ruvB) [Escherichia coli strain FDAARGOS_144]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGGCGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z8DY11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

59.248

94.94

0.563
  ruvB Streptococcus pneumoniae R6

59.248

94.94

0.563
  ruvB Streptococcus pneumoniae D39

59.248

94.94

0.563
  ruvB Synechocystis sp. PCC 6803

52.941

96.131

0.509
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494