Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XM56_RS01730 Genome accession   NZ_CP011286
Coordinates   415334..415882 (+) Length   182 a.a.
NCBI ID   WP_005165221.1    Uniprot ID   A0A0E1NLP2
Organism   Yersinia enterocolitica strain KNG22703     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410334..420882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM56_RS01720 (XM56_01720) - 411562..411915 (+) 354 WP_005165225.1 MmcQ/YjbR family DNA-binding protein -
  XM56_RS01725 (XM56_01725) uvrA 411974..414805 (-) 2832 WP_013650522.1 excinuclease ABC subunit UvrA -
  XM56_RS01730 (XM56_01730) ssb 415334..415882 (+) 549 WP_005165221.1 single-stranded DNA-binding protein SSB1 Machinery gene
  XM56_RS01735 (XM56_01735) - 416041..417288 (+) 1248 WP_000654660.1 tyrosine-type recombinase/integrase -
  XM56_RS01740 (XM56_01740) - 417275..418837 (+) 1563 WP_021571019.1 site-specific integrase -
  XM56_RS01745 (XM56_01745) - 418830..420863 (+) 2034 WP_000807724.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19084.10 Da        Isoelectric Point: 4.9567

>NTDB_id=144221 XM56_RS01730 WP_005165221.1 415334..415882(+) (ssb) [Yersinia enterocolitica strain KNG22703]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=144221 XM56_RS01730 WP_005165221.1 415334..415882(+) (ssb) [Yersinia enterocolitica strain KNG22703]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E1NLP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.729

100

0.588
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.484
  ssb Neisseria meningitidis MC58

46.703

100

0.467

Multiple sequence alignment