Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XM39_RS02660 Genome accession   NZ_CP011279
Coordinates   579117..579614 (-) Length   165 a.a.
NCBI ID   WP_042115613.1    Uniprot ID   -
Organism   Pandoraea apista strain TF80G25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 574117..584614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM39_RS02635 (XM39_17995) - 574192..575181 (+) 990 WP_042115610.1 flagellar brake protein -
  XM39_RS02640 (XM39_18000) xth 575301..576080 (-) 780 WP_042115611.1 exodeoxyribonuclease III -
  XM39_RS02645 (XM39_18005) - 576218..576430 (-) 213 WP_042118265.1 helix-turn-helix transcriptional regulator -
  XM39_RS02650 (XM39_18010) - 576441..576692 (-) 252 WP_042115612.1 helix-turn-helix transcriptional regulator -
  XM39_RS02655 (XM39_18015) - 576777..579008 (-) 2232 WP_045852665.1 DNA cytosine methyltransferase -
  XM39_RS02660 (XM39_18020) ssb 579117..579614 (-) 498 WP_042115613.1 single-stranded DNA-binding protein Machinery gene
  XM39_RS02665 (XM39_18025) - 579643..579876 (-) 234 WP_042115614.1 hypothetical protein -
  XM39_RS25150 - 579873..580049 (-) 177 WP_156181612.1 hypothetical protein -
  XM39_RS02670 (XM39_18030) - 580054..580419 (-) 366 WP_042115615.1 hypothetical protein -
  XM39_RS02675 (XM39_18035) - 580424..580735 (-) 312 WP_042115616.1 hypothetical protein -
  XM39_RS02680 (XM39_18040) - 580728..581033 (-) 306 WP_042115617.1 hypothetical protein -
  XM39_RS02685 (XM39_18045) - 581048..581581 (-) 534 WP_042115618.1 hypothetical protein -
  XM39_RS02690 (XM39_18050) - 581585..581899 (-) 315 WP_042115619.1 hypothetical protein -
  XM39_RS02695 (XM39_18055) - 581896..582870 (-) 975 WP_042118269.1 phage Gp37/Gp68 family protein -
  XM39_RS02700 (XM39_18060) - 582863..583246 (-) 384 WP_042115620.1 ASCH domain-containing protein -
  XM39_RS02705 - 583249..584028 (-) 780 WP_052765575.1 hypothetical protein -
  XM39_RS02710 (XM39_18070) - 584033..584242 (-) 210 WP_042115621.1 hypothetical protein -
  XM39_RS02715 (XM39_18075) - 584246..584503 (-) 258 WP_042115622.1 DUF6440 family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18150.11 Da        Isoelectric Point: 5.9748

>NTDB_id=144163 XM39_RS02660 WP_042115613.1 579117..579614(-) (ssb) [Pandoraea apista strain TF80G25]
MASVNKVILVGNLGADPETRYMPNGDAVCNIRLATTESWKDKASGERKEITEWHRVVFYRRLAEIAGEYLRKGSSVYVEG
RIRTRKWQDKDGQDRYTTEIEATEMQMLGQRGSGDGQQYGGESSAPPARQQQRSAPARGAPASRPAPPPSGGGGFADMDD
DIPFD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=144163 XM39_RS02660 WP_042115613.1 579117..579614(-) (ssb) [Pandoraea apista strain TF80G25]
ATGGCATCAGTCAATAAAGTAATCCTCGTCGGCAACCTTGGCGCCGACCCCGAAACCCGCTACATGCCGAACGGCGATGC
CGTCTGCAATATCCGCTTGGCGACGACGGAAAGCTGGAAGGACAAGGCCAGCGGCGAGCGCAAGGAAATCACCGAATGGC
ACCGCGTCGTTTTCTACCGCCGCCTCGCTGAAATCGCCGGCGAGTACCTGCGCAAGGGGTCTTCGGTCTATGTCGAGGGC
CGCATCCGCACGCGCAAGTGGCAGGACAAGGACGGCCAAGACCGCTACACGACCGAGATCGAGGCCACGGAAATGCAGAT
GCTGGGGCAGCGTGGCAGCGGCGACGGCCAGCAGTACGGCGGCGAATCATCGGCACCGCCGGCGCGCCAGCAACAGCGTT
CCGCACCCGCGCGCGGCGCTCCGGCATCCCGGCCCGCTCCGCCCCCGTCCGGTGGTGGCGGCTTTGCCGACATGGATGAC
GACATCCCTTTTGATTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.717

100

0.588
  ssb Glaesserella parasuis strain SC1401

51.892

100

0.582
  ssb Neisseria gonorrhoeae MS11

49.718

100

0.533
  ssb Neisseria meningitidis MC58

50.286

100

0.533

Multiple sequence alignment