Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   XM40_RS16280 Genome accession   NZ_CP011278
Coordinates   3373273..3373962 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain L-S60     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3368273..3378962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS16245 (XM40_16245) - 3368471..3368953 (-) 483 WP_003151394.1 flagellar protein FlgN -
  XM40_RS16250 (XM40_16250) flgM 3368968..3369234 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  XM40_RS16255 (XM40_16255) - 3369304..3369723 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  XM40_RS16260 (XM40_16260) comFC 3369797..3370486 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  XM40_RS16265 (XM40_16265) - 3370492..3370776 (-) 285 WP_003151389.1 competence protein ComFB -
  XM40_RS16270 (XM40_16270) comFA 3370834..3372219 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  XM40_RS16275 (XM40_16275) - 3372327..3373175 (-) 849 WP_043867471.1 DegV family protein -
  XM40_RS16280 (XM40_16280) degU 3373273..3373962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  XM40_RS16285 (XM40_16285) degS 3374039..3375202 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  XM40_RS16290 (XM40_16290) - 3375425..3376072 (+) 648 WP_043867472.1 YigZ family protein -
  XM40_RS16295 (XM40_16295) - 3376077..3377291 (+) 1215 WP_043867473.1 LCP family protein -
  XM40_RS16300 (XM40_16300) - 3377381..3378457 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=144149 XM40_RS16280 WP_003219701.1 3373273..3373962(-) (degU) [Bacillus velezensis strain L-S60]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=144149 XM40_RS16280 WP_003219701.1 3373273..3373962(-) (degU) [Bacillus velezensis strain L-S60]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment