Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   XM40_RS16260 Genome accession   NZ_CP011278
Coordinates   3369797..3370486 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3364797..3375486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS16225 (XM40_16225) fliW 3364888..3365319 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  XM40_RS16230 (XM40_16230) - 3365349..3365918 (-) 570 WP_024085861.1 DUF6470 family protein -
  XM40_RS16235 (XM40_16235) flgL 3366009..3366926 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  XM40_RS16240 (XM40_16240) flgK 3366938..3368455 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  XM40_RS16245 (XM40_16245) - 3368471..3368953 (-) 483 WP_003151394.1 flagellar protein FlgN -
  XM40_RS16250 (XM40_16250) flgM 3368968..3369234 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  XM40_RS16255 (XM40_16255) - 3369304..3369723 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  XM40_RS16260 (XM40_16260) comFC 3369797..3370486 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  XM40_RS16265 (XM40_16265) - 3370492..3370776 (-) 285 WP_003151389.1 competence protein ComFB -
  XM40_RS16270 (XM40_16270) comFA 3370834..3372219 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  XM40_RS16275 (XM40_16275) - 3372327..3373175 (-) 849 WP_043867471.1 DegV family protein -
  XM40_RS16280 (XM40_16280) degU 3373273..3373962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  XM40_RS16285 (XM40_16285) degS 3374039..3375202 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=144147 XM40_RS16260 WP_196769287.1 3369797..3370486(-) (comFC) [Bacillus velezensis strain L-S60]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=144147 XM40_RS16260 WP_196769287.1 3369797..3370486(-) (comFC) [Bacillus velezensis strain L-S60]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment