Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   XM40_RS16270 Genome accession   NZ_CP011278
Coordinates   3370834..3372219 (-) Length   461 a.a.
NCBI ID   WP_043867470.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365834..3377219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS16235 (XM40_16235) flgL 3366009..3366926 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  XM40_RS16240 (XM40_16240) flgK 3366938..3368455 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  XM40_RS16245 (XM40_16245) - 3368471..3368953 (-) 483 WP_003151394.1 flagellar protein FlgN -
  XM40_RS16250 (XM40_16250) flgM 3368968..3369234 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  XM40_RS16255 (XM40_16255) - 3369304..3369723 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  XM40_RS16260 (XM40_16260) comFC 3369797..3370486 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  XM40_RS16265 (XM40_16265) - 3370492..3370776 (-) 285 WP_003151389.1 competence protein ComFB -
  XM40_RS16270 (XM40_16270) comFA 3370834..3372219 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  XM40_RS16275 (XM40_16275) - 3372327..3373175 (-) 849 WP_043867471.1 DegV family protein -
  XM40_RS16280 (XM40_16280) degU 3373273..3373962 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  XM40_RS16285 (XM40_16285) degS 3374039..3375202 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  XM40_RS16290 (XM40_16290) - 3375425..3376072 (+) 648 WP_043867472.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.09 Da        Isoelectric Point: 10.0979

>NTDB_id=144148 XM40_RS16270 WP_043867470.1 3370834..3372219(-) (comFA) [Bacillus velezensis strain L-S60]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=144148 XM40_RS16270 WP_043867470.1 3370834..3372219(-) (comFA) [Bacillus velezensis strain L-S60]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(326-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment