Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AL510_RS03325 Genome accession   NZ_CP014027
Coordinates   662122..662550 (-) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_149     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657122..667550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL510_RS03290 (AL510_03190) proC 657490..658260 (+) 771 WP_010921805.1 pyrroline-5-carboxylate reductase -
  AL510_RS03295 (AL510_03195) - 658343..658651 (-) 309 WP_010921804.1 hypothetical protein -
  AL510_RS03300 (AL510_03200) - 658838..660034 (-) 1197 WP_010921803.1 acetate kinase -
  AL510_RS03305 (AL510_03205) comGH 660093..661046 (-) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  AL510_RS03310 (AL510_03210) comGG 661144..661470 (-) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  AL510_RS03315 (AL510_03215) comGF 661454..661888 (-) 435 WP_010921800.1 competence type IV pilus minor pilin ComGF Machinery gene
  AL510_RS03320 (AL510_03220) comGE 661881..662165 (-) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  AL510_RS03325 (AL510_03225) comGD 662122..662550 (-) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  AL510_RS03330 (AL510_03230) comGC 662525..662851 (-) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  AL510_RS03335 (AL510_03235) comGB 662853..663887 (-) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  AL510_RS03340 (AL510_03240) comGA 663823..664761 (-) 939 WP_010921798.1 competence type IV pilus ATPase ComGA Machinery gene
  AL510_RS03345 (AL510_03245) - 664854..665219 (-) 366 WP_002986560.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=144017 AL510_RS03325 WP_002986548.1 662122..662550(-) (comGD) [Streptococcus pyogenes strain FDAARGOS_149]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=144017 AL510_RS03325 WP_002986548.1 662122..662550(-) (comGD) [Streptococcus pyogenes strain FDAARGOS_149]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366