Detailed information NTG0143929

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AL533_RS02805
• Genome accession: NZ_CP014019
• Coordinates: 581293..582297 (-)
• Length: 334 a.a.
• NCBI ID: WP_002052424.1
• Uniprot ID: A0AA36K9C9
• Organism: Acinetobacter nosocomialis strain FDAARGOS_129
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 576293..587297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL533_RS02780 (AL533_02780)	tolA	576615..577958 (-)	1344	WP_104918656.1	cell envelope integrity protein TolA	-
AL533_RS02785 (AL533_02785)	tolR	577962..578414 (-)	453	WP_016803985.1	protein TolR	-
AL533_RS02790 (AL533_02790)	tolQ	578414..579112 (-)	699	WP_002052880.1	protein TolQ	-
AL533_RS02795 (AL533_02795)	ybgC	579137..579544 (-)	408	WP_002052673.1	tol-pal system-associated acyl-CoA thioesterase	-
AL533_RS02800 (AL533_02800)	-	579754..581088 (-)	1335	WP_104918657.1	M20 family metallopeptidase	-
AL533_RS02805 (AL533_02805)	ruvB	581293..582297 (-)	1005	WP_002052424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AL533_RS02810 (AL533_02810)	ruvA	582306..582905 (-)	600	WP_017398135.1	Holliday junction branch migration protein RuvA	-
AL533_RS02815 (AL533_02815)	-	582997..584337 (-)	1341	WP_004885767.1	deoxyguanosinetriphosphate triphosphohydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36802.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=143929 AL533_RS02805 WP_002052424.1 581293..582297(-) (ruvB) [Acinetobacter nosocomialis strain FDAARGOS_129]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=143929 AL533_RS02805 WP_002052424.1 581293..582297(-) (ruvB) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATTGGACAGCCAGTTGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGGGGTCGTGGTGAAGCACTCGATC
ACACGCTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCAGGAGATTTGGCTGCAATGCTCACCAACCTTGAAGAAGGCGATGTTCT
ATTTATTGATGAAATTCACCGTCTTTCTCCAGTGATTGAAGAAATTCTGTATCCGGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCTCGTTCAATTAAACTAGATTTACCACCTTTTACGCTCGTTGCTGCCACCACACGT
GCCGGCTTACTCACCTCACCTCTACGCGACCGTTTTGGTATTGTGCAGCGTCTTGAGTTTTACTCTGTAGAAGACCTAAC
TCATATCGTGTCACGTTCTGCAAACCTCATGGATGTACCAATTACAGTTGAAGGTGCAGAAGAAGTAGCTCGTCGCTCAC
GCGGTACTCCGCGTATTGCCAATCGTTTATTACGACGTGTTCGCGACTATGCACAAGTAAAAGGTACGGGTGAGGTGACT
CATGAAATGGCACAACGTGCGCTTGATATGCTCAATGTTGATAAAGCTGGTCTAGATACTCTAGACCGTCGTTATTTGAG
CATGTTACTCGAGCGTTTTGATGGCGGTCCTGCTGGAGTTGAAGCGCTTGCAGCTGCTATGGCTGAAGACAGCGGCACAC
TTGAAGACGTGATTGAACCTTATTTAATTCAACAAGGTTATGTCATGCGTACCGCACGAGGTCGTATAGCAACCAACCAA
TCTTATTTACAGTTTGGAATGACGCCCCCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

3D structure

• AlphaFold DB: A0AA36K9C9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.006	99.102	0.575
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5