Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AL533_RS01485 Genome accession   NZ_CP014019
Coordinates   295286..295648 (+) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290286..300648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS01470 (AL533_01470) - 292777..293895 (-) 1119 WP_016804666.1 efflux RND transporter periplasmic adaptor subunit -
  AL533_RS01475 (AL533_01475) - 293955..294593 (-) 639 WP_016804665.1 hypothetical protein -
  AL533_RS01480 (AL533_01480) pilG 294876..295259 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  AL533_RS01485 (AL533_01485) pilH 295286..295648 (+) 363 WP_002051151.1 PleD family two-component system response regulator Machinery gene
  AL533_RS01490 (AL533_01490) - 295706..296242 (+) 537 WP_002051357.1 chemotaxis protein CheW -
  AL533_RS01495 (AL533_01495) - 296289..298370 (+) 2082 WP_004885376.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=143924 AL533_RS01485 WP_002051151.1 295286..295648(+) (pilH) [Acinetobacter nosocomialis strain FDAARGOS_129]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=143924 AL533_RS01485 WP_002051151.1 295286..295648(+) (pilH) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGGGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment