Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVT04_RS07650 Genome accession   NZ_CP013939
Coordinates   1427702..1428388 (+) Length   228 a.a.
NCBI ID   WP_011227424.1    Uniprot ID   Q5LYU6
Organism   Streptococcus thermophilus strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422702..1433388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS07640 (AVT04_07640) - 1424289..1426034 (+) 1746 WP_011227426.1 rhamnan synthesis F family protein -
  AVT04_RS07645 (AVT04_07645) - 1426183..1427523 (+) 1341 WP_231108743.1 DUF2142 domain-containing protein -
  AVT04_RS07650 (AVT04_07650) radC 1427702..1428388 (+) 687 WP_011227424.1 RadC family protein Machinery gene
  AVT04_RS07655 (AVT04_07655) - 1428441..1429136 (-) 696 WP_011227423.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AVT04_RS07660 (AVT04_07660) - 1429129..1429788 (-) 660 WP_041827076.1 redox-sensing transcriptional repressor Rex -
  AVT04_RS07665 (AVT04_07665) - 1429932..1430279 (-) 348 WP_002948028.1 DUF1831 domain-containing protein -
  AVT04_RS10435 (AVT04_07670) - 1430281..1431393 (-) 1113 WP_002948029.1 cysteine desulfurase family protein -
  AVT04_RS10440 (AVT04_07675) - 1431397..1432368 (-) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  AVT04_RS07680 (AVT04_07680) - 1432731..1433306 (-) 576 WP_002951444.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25817.88 Da        Isoelectric Point: 6.6449

>NTDB_id=143253 AVT04_RS07650 WP_011227424.1 1427702..1428388(+) (radC) [Streptococcus thermophilus strain S9]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=143253 AVT04_RS07650 WP_011227424.1 1427702..1428388(+) (radC) [Streptococcus thermophilus strain S9]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTATCTGA
CCAGGAATTGTTGGCGATAGTGCTGCGGACGGGGACTAAGTCTGAGTCGGTTCTATCTATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LYU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.482

98.246

0.575
  radC Streptococcus pneumoniae R6

58.036

98.246

0.57
  radC Streptococcus pneumoniae D39

58.036

98.246

0.57
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.113

92.982

0.447