Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AVT04_RS05425 Genome accession   NZ_CP013939
Coordinates   1014526..1015527 (+) Length   333 a.a.
NCBI ID   WP_002948618.1    Uniprot ID   Q5M2B1
Organism   Streptococcus thermophilus strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1009526..1020527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS05405 (AVT04_05405) - 1010208..1011500 (+) 1293 WP_002948622.1 adenylosuccinate synthase -
  AVT04_RS05410 (AVT04_05410) - 1011782..1012216 (+) 435 WP_002948621.1 low molecular weight protein-tyrosine-phosphatase -
  AVT04_RS05415 (AVT04_05415) - 1012213..1012623 (+) 411 WP_002948620.1 membrane protein -
  AVT04_RS05420 (AVT04_05420) - 1012620..1014443 (+) 1824 WP_011227608.1 acyltransferase family protein -
  AVT04_RS05425 (AVT04_05425) ruvB 1014526..1015527 (+) 1002 WP_002948618.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AVT04_RS05430 (AVT04_05430) rpsJ 1015771..1016079 (+) 309 WP_002952168.1 30S ribosomal protein S10 -
  AVT04_RS05435 (AVT04_05435) rplC 1016196..1016822 (+) 627 WP_002952166.1 50S ribosomal protein L3 -
  AVT04_RS05440 (AVT04_05440) rplD 1016847..1017470 (+) 624 WP_002885795.1 50S ribosomal protein L4 -
  AVT04_RS05445 (AVT04_05445) - 1017470..1017766 (+) 297 WP_002887066.1 50S ribosomal protein L23 -
  AVT04_RS05450 (AVT04_05450) rplB 1017784..1018617 (+) 834 WP_002952161.1 50S ribosomal protein L2 -
  AVT04_RS05455 (AVT04_05455) rpsS 1018711..1018989 (+) 279 WP_000533765.1 30S ribosomal protein S19 -
  AVT04_RS05460 (AVT04_05460) rplV 1019005..1019349 (+) 345 WP_002887063.1 50S ribosomal protein L22 -
  AVT04_RS05465 (AVT04_05465) rpsC 1019362..1020015 (+) 654 WP_002952158.1 30S ribosomal protein S3 -
  AVT04_RS05470 (AVT04_05470) rplP 1020019..1020432 (+) 414 WP_011226664.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37540.93 Da        Isoelectric Point: 4.4605

>NTDB_id=143223 AVT04_RS05425 WP_002948618.1 1014526..1015527(+) (ruvB) [Streptococcus thermophilus strain S9]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=143223 AVT04_RS05425 WP_002948618.1 1014526..1015527(+) (ruvB) [Streptococcus thermophilus strain S9]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7PBL
  PDB 7PBM
  PDB 7PBN
  PDB 7PBO
  PDB 7PBP
  PDB 7PBQ
  PDB 7PBR
  PDB 7PBS
  PDB 7PBT

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

88.182

99.099

0.874
  ruvB Streptococcus pneumoniae R6

87.879

99.099

0.871
  ruvB Streptococcus pneumoniae D39

87.879

99.099

0.871
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.359

98.799

0.577
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48
  ruvB Synechocystis sp. PCC 6803

50.799

93.994

0.477